Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq47 123 2e-23 seq94 104 2e-17 >seq47 Length=5048387 Score = 123 bits (136), Expect = 2e-23 Identities = 171/237 (72%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || |||| || |||| ||| | ||| |||||||| |||||||||||||| | Sbjct 1632671 CCACCACGGAGTCGCAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCAGAT 1632730 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | |||| | ||||||||| || ||||| ||| |||| || | |||||||| || Sbjct 1632731 AGTGTTCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGA 1632790 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||| || || || | | || ||||| | ||| ||||||| || || Sbjct 1632791 ATGCCTTCTTTGTCCTGGATCT-TGGCTTTGACGTTCTCAATGGTGTCACTTGGTTCAAC 1632849 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAACT 18334 ||||| ||| ||| | ||||| ||||| || || ||||| || |||||||| ||||| Sbjct 1632850 TTCAAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATTTTGAAACT 1632906 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 18097 ATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGG 18156 |||| || || || | || |||| ||| | ||| |||||||| |||||||||||||| | Sbjct 1632213 ATCCACCACGGAGACGCAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCAG 1632272 Query 18157 CCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGG 18216 | |||| | ||||||||| || ||||| ||| |||| || | |||||||| | Sbjct 1632273 ATAGTGTTCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAG 1632332 Query 18217 GCACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCG 18275 | | |||||| || || || | | || ||||| | ||| ||||||| || || Sbjct 1632333 GAATGCCTTCTTTGTCCTGGATCT-TGGCTTTGACGTTCTCAATGGTGTCACTTGGTTCA 1632391 Query 18276 GTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||| ||| | ||||| ||||| || || ||||| || ||||| Sbjct 1632392 ACTTCAAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1632441 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || |||| || |||| ||| | ||| |||||||| |||||||||||||| | Sbjct 1632443 CCACCACGGAGTCGCAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCAGAT 1632502 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | |||| | ||||||||| || ||||| ||| |||| || | |||||||| || Sbjct 1632503 AGTGTTCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGA 1632562 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||| || || || | | || ||||| | ||| ||||||| || || Sbjct 1632563 ATGCCTTCTTTGTCCTGGATCT-TGGCTTTGACGTTCTCAATGGTGTCACTTGGTTCAAC 1632621 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||| ||| | ||||| ||||| || || ||||| || ||||| Sbjct 1632622 TTCAAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1632669 >seq94 Length=3237593 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| ||||| || ||||| |||||||||||||| | || ||| || ||| Sbjct 38343 AGCACCAAGTGCAGTGTGGACTCTTTCTGAATGTTGTAGTCAGACAGTGTGCGACCATCC 38402 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || | || || || ||| | |||||| || || Sbjct 38403 TCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGGGGAATGCCTTCTTTGTCC 38462 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 |||| ||| || | ||| ||||||| |||||| |||| |||||| | Sbjct 38463 TGGATTTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCTACCTCAAGTGTGATGGTC 38522 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||||||| || || ||||| || ||||| Sbjct 38523 TTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 38554 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| ||||| ||||| || || ||||||||||| | || ||| || |||||| Sbjct 38802 ACCAAGTGCAGTGTGGATTCCTTCTGGATGTTGTAGTCAGACAGTGTGCGACCATCTTCA 38861 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 | || ||||| ||| | || || | || ||||| ||| | ||||||||| || Sbjct 38862 AGCTGCTTGCCAGCAAAAATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGG 38921 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 |||| ||| || | | ||| ||||||| ||| || || | |||||| | ||| Sbjct 38922 ATTTTGGCCTTCACGTTTTCAATGGTGTCACTGGGTTCAACCTCCAATGTGATGGTCTTG 38981 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || ||||| || || |||||||| ||||| Sbjct 38982 CCAGTCAAGGTCTTGACAAAAATCTGCAT 39010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379245968500980