Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq797 134 1e-26 seq94 118 9e-22 seq47 98.7 9e-16 >seq797 Length=31933 Score = 134 bits (148), Expect = 1e-26 Identities = 124/157 (79%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 23339 TTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCG 23398 || ||||| ||| ||||||||||||| || ||||| || |||||||| || || || || Sbjct 20542 TTCTCAACACGTTTCATAAAAAGATCAGGAATCCAGAGGGCGTAGAAGAGATCCCGTGCT 20601 Query 23399 CGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGC 23458 | | ||||||||| || |||||||||||||| |||||||| || || | ||| |||| Sbjct 20602 CTCTGCTCCTCTTTCCCAGTGTTCTTTTTCAACTCCAAAAAATCAAAGATATCCAGATGC 20661 Query 23459 CACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||| || ||||| | ||| || || || ||||||| Sbjct 20662 CACGGTTCCAGGTAGATGGCGAAAGCACCTGGTCTCT 20698 >seq94 Length=3237593 Score = 118 bits (130), Expect = 9e-22 Identities = 169/237 (71%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 31185 AATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTG 31244 || |||| ||||| ||||| || || || ||||| ||||| || || || | || || | Sbjct 39701 AAACAAA-ATGCAGATTTTTGTGAAAACCCTGACTGGCAAGACTATTACACTGGAGGTGG 39643 Query 31245 AACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGC 31304 |||| |||| | |||| ||||| | || |||||| |||||| | || | Sbjct 39642 AACCCAGTGACACCATTGAAAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCAC 39583 Query 31305 CCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCG 31364 ||||||| |||||||| || ||||||||||||||| ||||||| || || | Sbjct 39582 CCGACCAACAGCGTCTGATCTTCGCTGGCAAACAGCTGGAAGAAGGCCGCACACTGTCAG 39523 Query 31365 ATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | || || || || ||||| || |||||||||||||| || | ||||| || |||| Sbjct 39522 ACTACAATATCCAGAAAGAGTCCACTCTTCATCTGGTGCTGCGTCTGAGAGGGGGTA 39466 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| ||||| || ||||| |||| ||||| || ||||| | || |||||||| Sbjct 39011 CATGCAGATTTTTGTCAAGACCTTGACTGGCAAGACCATCACATTGGAGGTTGAACCCAG 38952 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| || || | ||| ||||||||||||| | || || || || Sbjct 38951 TGACACCATTGAAAACGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGATCA 38892 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || |||||||| ||| | ||||| | || || || || || Sbjct 38891 GCAGCGTCTGATTTTTGCTGGCAAGCAGCTTGAAGATGGTCGCACACTGTCTGACTACAA 38832 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || ||||| || || || |||| | | ||||| ||||| Sbjct 38831 CATCCAGAAGGAATCCACACTGCACTTGGTGTTGCGTCTGAGAGGCGG 38784 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| |||| ||||| || ||||| | || || ||||| Sbjct 39239 CATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACACTGGAAGTGGAACCCAG 39180 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| | || |||||| |||||| | || |||||||| Sbjct 39179 TGACACCATTGAGAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCACCCGACCA 39120 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || ||||| |||||| | || || || || || || || Sbjct 39119 GCAGCGTCTGATCTTTGCTGGTAAACAGCTAGAGGATGGCCGCACACTGTCAGACTACAA 39060 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || |||||||| ||||| |||||||| || | ||||| || || Sbjct 39059 CATCCAGAAAGAATCTACTCTCCATCTGGTGCTGCGTCTGAGAGGAGG 39012 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||| ||||| || ||||| | || || || || Sbjct 38554 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACACTTGAGGTAGAGCCCAGT 38495 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | ||| |||||| |||||| | || ||||||||| Sbjct 38494 GACACCATTGAGAACGTGAAGGCCAAAATCCAGGACAAAGAAGGCATTCCCCCCGACCAG 38435 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || |||||||| ||| |||| || | || || || || ||| Sbjct 38434 CAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGTCGCACACTGTCTGACTACAAC 38375 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| ||||| || || || || |||| || | ||||| || || Sbjct 38374 ATTCAGAAAGAGTCCACACTGCACTTGGTGCTGCGTCTGAGAGGGGG 38328 >seq47 Length=5048387 Score = 98.7 bits (108), Expect = 9e-16 Identities = 166/237 (70%), Gaps = 5/237 (2%) Strand=Plus/Minus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 ||||| ||||| || || || ||||| |||| ||||| || || ||| | || |||||| Sbjct 1632902 TCAAA-ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTTGAA 1632844 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 || |||| | || | |||||| | || |||||| |||||| | || || Sbjct 1632843 CCAAGTGACACCATTGAGAACGTCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCTCCT 1632784 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA--CTCTATGACTATGAGCG 31364 || || |||||||| || || |||||||| ||||||||||| | | ||||| | Sbjct 1632783 GATCAACAGCGTCTCATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGAACACTAT--CTG 1632726 Query 31365 ATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | || |||||||| |||||||| || | || |||| || |||| | || |||| Sbjct 1632725 ACTACAACATTCAGAAAGAATCCACATTACACTTGGTGCTGCGACTCCGTGGTGGTA 1632669 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| |||| ||||| || || ||| | || |||||||| Sbjct 1632669 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTTGAACCAAGT 1632610 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||| | || |||||| |||||| | || || || || Sbjct 1632609 GACACCATTGAGAACGTCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGATCAA 1632550 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA--CTCTATGACTATGAGCGATTATA 31370 |||||||| || || |||||||| ||||||||||| | | ||||| || || | Sbjct 1632549 CAGCGTCTCATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGAACACTAT--CTGACTACA 1632492 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||||| |||||||| || | || |||| || |||| | || |||| Sbjct 1632491 ACATTCAGAAAGAATCCACATTACACTTGGTGCTGCGACTCCGTGGTGGTA 1632441 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| |||| ||||| || || ||| | || |||||||| Sbjct 1632441 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTTGAACCAAGT 1632382 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||| | || |||||| |||||| | || || || || Sbjct 1632381 GACACCATTGAGAACGTCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGATCAA 1632322 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA--CTCTATGACTATGAGCGATTATA 31370 |||||||| || || |||||||| ||||||||||| | | ||||| || || | Sbjct 1632321 CAGCGTCTCATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGAACACTAT--CTGACTACA 1632264 Query 31371 ACATTCAAAAAGAATCGAC 31389 ||||||| |||||||| || Sbjct 1632263 ACATTCAGAAAGAATCCAC 1632245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445648249615680