Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq797 102 1e-16 seq51 102 1e-16 seq121 89.7 6e-13 >seq797 Length=31933 Score = 102 bits (112), Expect = 1e-16 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| || || || ||||| || || |||||| || | || ||||| || ||||||| Sbjct 10465 TCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTAGGTTCTGCAATGTGGATAT 10524 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 |||| || ||||| ||||||||| |||| || | || || ||||| || || || || | Sbjct 10525 TCATCGACTGACTCTGATCGATGTAGGCACCGCGATCAGCTGCCATCTTAATAATAGTTT 10584 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 62281 | |||| |||||||| | |||||| || | | ||| | ||| || || Sbjct 10585 TCTGTGAGATTTCCCAGACAGTTTTGTACAGTAACTTGAGATCATCAGG 10633 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 62387 TACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62446 ||| ||||| ||||| || | ||||||| ||||||||||| ||||| ||||| || | Sbjct 10963 TACCTGGAACTCTCCTGAGAGCACTCTCCTTGTGTAAATATTGCTGGTGTACGGCTCAAT 11022 Query 62447 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62506 |||||||| || |||| || ||||| || || || || ||||| || | | ||| | Sbjct 11023 GGACTCATTGTTACCCAGGATCTGAGCTGTAGAGGCTGTTGGCATTGGAGAAATCAAGAG 11082 Query 62507 ACTATTTCTAAGACCGTA 62524 ||| |||| || |||||| Sbjct 11083 ACTGTTTCGAACACCGTA 11100 Score = 89.7 bits (98), Expect = 6e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 63267 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGT 63326 || ||||||||||| |||||||||||||| || || || ||||| | || ||| || Sbjct 20548 ACACGTTTCATAAAAAGATCAGGAATCCAGAGGGCGTAGAAGAGATCCCGTGCTCTCTGC 20607 Query 63327 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63386 ||||| || || || |||||||| | || | || | | ||||| |||||||||| Sbjct 20608 TCCTCTTTCCCAGTGTTCTTTTTCAACTCCAAAAAATCAAAGATATCCAGATGCCACGGT 20667 Query 63387 TCCAAGTATATGGC 63400 |||| ||| ||||| Sbjct 20668 TCCAGGTAGATGGC 20681 >seq51 Length=4861936 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || || | ||| ||||| || || | || ||||| || || ||||| | Sbjct 4860281 CCTCATCTCTGCTGATCAGTTCATTAGAGAAGGTCAAGCCAGGCATCAGACCTCGCTTCT 4860340 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | | ||| || || | |||||||||||| || || |||||||||||||| |||||||| | Sbjct 4860341 TCAACCAGAAAATAGCAGCGAATGATCCAGAGAAAAAGATTCCTTCTACAGCAGCAAAAG 4860400 Query 33724 CAATAAGTCTCTCTCC 33739 | | || || ||| || Sbjct 4860401 CCACAATTCGCTCCCC 4860416 Score = 86.0 bits (94), Expect = 8e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 33852 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33911 |||||||| || | |||||||||||| || || ||||| || || || || || || || Sbjct 4860914 TAAGTATCAATAAGAAGACTATACATCTCAGAGTGAATATTCTCCATAGCAATTTGGAAA 4860973 Query 33912 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 33961 || |||||||| | ||||||||| || || |||||| || || ||||| Sbjct 4860974 CCATAGAAACAGCGAGCCTCGGTGATTTGAACTTCTTGACTGAAGCGTTC 4861023 >seq121 Length=2118225 Score = 89.7 bits (98), Expect = 6e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || || || || || | || || ||||| || || || |||||||| || || || || Sbjct 638937 TCATCCCTGCTGATCAGCTCATTGGAAAAGGTAAGGCCTGGCATTAGCCCTCGTTTCTTC 638878 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33725 |||||||| |||| |||||||||||| || || || || || || || |||||||| || Sbjct 638877 AGCCAAAAAATGGCAGCGAATGATCCTGAGAAAAATATCCCCTCAACAGCAGCAAAAGCT 638818 Query 33726 ATAAGTCTCTCTCC 33739 | |||| ||||| Sbjct 638817 ACCAGTCGGTCTCC 638804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629650666845120