Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq51 98.7 9e-16 seq797 89.7 5e-13 >seq51 Length=4861936 Score = 98.7 bits (108), Expect = 9e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || ||||||||||| || || || || ||||||| ||||| || || Sbjct 4860283 TCATCTCTGCTGATCAGTTCATTAGAGAAGGTCAAGCCAGGCATCAGACCTCGCTTCTTC 4860342 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || |||||||| ||||| ||||| || || ||||| || ||||| ||||| || Sbjct 4860343 AACCAGAAAATAGCAGCGAATGATCCAGAGAAAAAGATTCCTTCTACAGCAGCAAAAGCC 4860402 Query 11774 AC 11775 || Sbjct 4860403 AC 4860404 >seq797 Length=31933 Score = 89.7 bits (98), Expect = 5e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 ||||| || ||||| || | ||||| ||||| || |||||||| || || || |||||| Sbjct 10964 ACCTGGAACTCTCCTGAGAGCACTCTCCTTGTGTAAATATTGCTGGTGTACGGCTCAATG 11023 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGG 37244 |||||||| |||| | || |||| |||||| || || |||||||| Sbjct 11024 GACTCATTGTTACCCAGGATCTGAGCTGTAGAGGCTGTTGGCATTGG 11070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468400617501760