Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq797 102 1e-16 seq51 91.5 2e-13 >seq797 Length=31933 Score = 102 bits (112), Expect = 1e-16 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| || || || ||||| || || |||||| || | || ||||| || ||||||| Sbjct 10465 TCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTAGGTTCTGCAATGTGGATAT 10524 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 |||| || ||||| ||||||||| |||| || | || || ||||| || || || || | Sbjct 10525 TCATCGACTGACTCTGATCGATGTAGGCACCGCGATCAGCTGCCATCTTAATAATAGTTT 10584 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 65074 | |||| |||||||| | |||||| || | | ||| | ||| || || Sbjct 10585 TCTGTGAGATTTCCCAGACAGTTTTGTACAGTAACTTGAGATCATCAGG 10633 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 65180 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 65239 ||| || || ||||| || | ||||||| ||||||||||| ||||| ||||| || | Sbjct 10963 TACCTGGAACTCTCCTGAGAGCACTCTCCTTGTGTAAATATTGCTGGTGTACGGCTCAAT 11022 Query 65240 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 65299 |||||||| || |||| || ||||| || || || || ||||| || | | ||| | Sbjct 11023 GGACTCATTGTTACCCAGGATCTGAGCTGTAGAGGCTGTTGGCATTGGAGAAATCAAGAG 11082 Query 65300 ACTATTTCTAAGACCGTA 65317 ||| |||| || |||||| Sbjct 11083 ACTGTTTCGAACACCGTA 11100 >seq51 Length=4861936 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 36428 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 36487 || |||||||| | |||||||||||| || || ||||| || || || || ||||| || Sbjct 4860914 TAAGTATCAATAAGAAGACTATACATCTCAGAGTGAATATTCTCCATAGCAATTTGGAAA 4860973 Query 36488 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 36537 || |||||||| | ||||||||| || || |||||| || || ||||| Sbjct 4860974 CCATAGAAACAGCGAGCCTCGGTGATTTGAACTTCTTGACTGAAGCGTTC 4861023 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| || || | ||| || || || || | || ||||| || || ||||| | Sbjct 4860281 CCTCATCTCTGCTGATCAGTTCATTAGAGAAGGTCAAGCCAGGCATCAGACCTCGCTTCT 4860340 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | | ||| || || | || ||||||||||| || || ||||||||||| || ||||| | Sbjct 4860341 TCAACCAGAAAATAGCAGCGAATGATCCAGAGAAAAAGATTCCTTCTACAGCAGCAAAAG 4860400 Query 36300 CAATAAGTCTCTCTCC 36315 | | || || ||| || Sbjct 4860401 CCACAATTCGCTCCCC 4860416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657998351299360