Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq797 107 3e-18 seq51 93.3 6e-14 >seq797 Length=31933 Score = 107 bits (118), Expect = 3e-18 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| || ||||| ||||| || || |||||| || | || ||||| || ||||||| Sbjct 10465 TCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTAGGTTCTGCAATGTGGATAT 10524 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 |||| || ||||| ||||||||| |||| || | || || ||||| || || || || | Sbjct 10525 TCATCGACTGACTCTGATCGATGTAGGCACCGCGATCAGCTGCCATCTTAATAATAGTTT 10584 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 78953 | |||| |||||||| | |||||| || | | ||| | ||| || || Sbjct 10585 TCTGTGAGATTTCCCAGACAGTTTTGTACAGTAACTTGAGATCATCAGG 10633 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 || ||||||||||| |||||||||||||| || || || ||||| | | ||| ||| Sbjct 20548 ACACGTTTCATAAAAAGATCAGGAATCCAGAGGGCGTAGAAGAGATCCCGTGCTCTCTGC 20607 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 ||||| || || || |||||||| | || | || | | ||||| |||||||||| Sbjct 20608 TCCTCTTTCCCAGTGTTCTTTTTCAACTCCAAAAAATCAAAGATATCCAGATGCCACGGT 20667 Query 80059 TCCAAGTATATGGCCATAACTCCCGGTC 80086 |||| ||| ||||| | | | || |||| Sbjct 20668 TCCAGGTAGATGGCGAAAGCACCTGGTC 20695 Score = 87.8 bits (96), Expect = 3e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 79059 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCAC 79118 ||| || || ||||| || | ||||||| ||||||||||| ||||| || || || | Sbjct 10963 TACCTGGAACTCTCCTGAGAGCACTCTCCTTGTGTAAATATTGCTGGTGTACGGCTCAAT 11022 Query 79119 CGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAA 79178 || ||||| || |||| || ||||| || || || |||||||| || | | ||| | Sbjct 11023 GGACTCATTGTTACCCAGGATCTGAGCTGTAGAGGCTGTTGGCATTGGAGAAATCAAGAG 11082 Query 79179 ACTATTTCTAAGACCGTA 79196 ||| |||| || |||||| Sbjct 11083 ACTGTTTCGAACACCGTA 11100 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 79668 TATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTT 79727 ||| || || || |||||||| ||||||||||||| ||||| || || || ||||| | Sbjct 16702 TATCTCTGTACACAGGTTACTGGACTTAATGGTTCCCAAATTCTGGTGGTTGGTCTTTCT 16761 Query 79728 GTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAAT 79787 ||| || || || || || | ||| |||| || ||||| || |||| || || ||||| Sbjct 16762 GTTGCAGGCGTCTTTGTACATCATGTACGGGGTGCCAGTCTCTGTCTGTGACTCAATAAT 16821 Query 79788 CGCTTTCCA 79796 || | ||| Sbjct 16822 AGCATACCA 16830 >seq51 Length=4861936 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| || || ||||| || || || || | || ||||| || || ||||| | Sbjct 4860281 CCTCATCTCTGCTGATCAGTTCATTAGAGAAGGTCAAGCCAGGCATCAGACCTCGCTTCT 4860340 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | | ||| || || | || ||||| ||||| || |||||||||||||| || ||||| | Sbjct 4860341 TCAACCAGAAAATAGCAGCGAATGATCCAGAGAAAAAGATTCCTTCTACAGCAGCAAAAG 4860400 Query 50102 CAACAAGTCTCTCTCC 50117 | |||| || ||| || Sbjct 4860401 CCACAATTCGCTCCCC 4860416 Score = 86.0 bits (94), Expect = 9e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 50230 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 50289 |||||||| || | |||||||||||| || || ||||| || || || || || || || Sbjct 4860914 TAAGTATCAATAAGAAGACTATACATCTCAGAGTGAATATTCTCCATAGCAATTTGGAAA 4860973 Query 50290 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 50339 || |||||||| | ||||||||| || || |||||| || || ||||| Sbjct 4860974 CCATAGAAACAGCGAGCCTCGGTGATTTGAACTTCTTGACTGAAGCGTTC 4861023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718078422854560