Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq121 82.4 7e-11 >seq121 Length=2118225 Score = 82.4 bits (90), Expect = 7e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583 ||||||||| |||| ||| || || || ||| || | || || ||||| | Sbjct 640613 TAAAAATCAGCATCCAATCTGAAGCTGTTTTCTTCTGCTTTGCACATTACCCCCATCCTC 640554 Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 ||||| ||| ||||| || ||||||||||| ||||| |||||||| || || || ||| Sbjct 640553 TGATACTCAGCAACTCGCTTCTCAAAGAAGTTGGTTTTCCCTTCCAGAGAAATGTTCTCC 640494 Query 13644 ATAAAATCAAATGGATTT 13661 || || ||||| |||||| Sbjct 640493 ATGAAGTCAAAAGGATTT 640476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479600848093600