Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq121 116 4e-21 seq51 102 8e-17 >seq121 Length=2118225 Score = 116 bits (128), Expect = 4e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 13684 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 13743 ||||| || || || || || || ||||| || | |||||||| | |||||||| || Sbjct 638937 TCATCCCTGCTGATCAGCTCATTGGAAAAGGTAAGGCCTGGCATTAGCCCTCGTTTCTTC 638878 Query 13744 AACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCT 13803 | |||||| || |||||||||||||| || || ||||| |||||||| |||||||| ||| Sbjct 638877 AGCCAAAAAATGGCAGCGAATGATCCTGAGAAAAATATCCCCTCAACAGCAGCAAAAGCT 638818 Query 13804 ATTAGTCGTTCTCC 13817 | ||||| ||||| Sbjct 638817 ACCAGTCGGTCTCC 638804 >seq51 Length=4861936 Score = 102 bits (112), Expect = 8e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| || || ||||| || || || || || || ||||||| ||||| || | Sbjct 4860281 CCTCATCTCTGCTGATCAGTTCATTAGAGAAGGTCAAGCCAGGCATCAGACCTCGCTTCT 4860340 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | ||||| || || |||||||||||||| || || || ||||| || || |||||||| | Sbjct 4860341 TCAACCAGAAAATAGCAGCGAATGATCCAGAGAAAAAGATTCCTTCTACAGCAGCAAAAG 4860400 Query 13802 C 13802 | Sbjct 4860401 C 4860401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478461950038560