Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq94 105 5e-18 seq47 82.4 6e-11 >seq94 Length=3237593 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 ||||| ||| | |||| ||| || || | |||||| || |||| ||| || | || || Sbjct 39485 CACCAGATGAAGAGTGGACTCTTTCTGGATATTGTAGTCTGACAGTGTGCGGCCTTCTTC 39544 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 || |||||||| || || |||| |||||||| |||| || | |||||||| || Sbjct 39545 CAGCTGTTTGCCAGCGAAGATCAGACGCTGTTGGTCGGGTGGAATGCCTTCTTTGTCCTG 39604 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079 |||| | ||||| | ||| ||||| | | || || || | || ||||| || Sbjct 39605 GATCTTAGCCTTGACATTTTCAATGGTGTCACTGGGTTCCACCTCCAGTGTAATAGTCTT 39664 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTT 43115 || || || |||||||||||||| |||||||| || Sbjct 39665 GCCAGTCAGGGTTTTCACAAAAATCTGCATTTTGTT 39700 >seq47 Length=5048387 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| |||| | |||||| || | ||| || || || | ||||| || || Sbjct 1632671 CCACCACGGAGTCGCAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCAGAT 1632730 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| || | || ||||| || ||||| ||||| || | ||||||||||| | || Sbjct 1632731 AGTGTTCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGA 1632790 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || |||| ||||||| | ||| ||||| | | || || Sbjct 1632791 ATGCCTTCTTTGTCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGTTCAACT 1632850 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || || || || || | || |||||||| || |||||||| Sbjct 1632851 TCAAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATTTT 1632900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381271045037832