Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq797 116 5e-21 seq51 96.9 5e-15 >seq797 Length=31933 Score = 116 bits (128), Expect = 5e-21 Identities = 127/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| || || || ||||| || || |||||| ||| |||| || || ||||| |||| Sbjct 10465 TCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTAGGTTCTGCAATGTGGATAT 10524 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||||||||||||| ||||||||| |||| || | || || ||||| || || || || | Sbjct 10525 TCATCGACTGACTCTGATCGATGTAGGCACCGCGATCAGCTGCCATCTTAATAATAGTTT 10584 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 71036 | |||| |||||||| | |||||| || | | ||| | ||| || || Sbjct 10585 TCTGTGAGATTTCCCAGACAGTTTTGTACAGTAACTTGAGATCATCAGG 10633 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 || ||||||||||| |||||||||||||| || || || ||||| | | ||| ||| Sbjct 20548 ACACGTTTCATAAAAAGATCAGGAATCCAGAGGGCGTAGAAGAGATCCCGTGCTCTCTGC 20607 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 ||||| || || || |||||||| | || | || | | ||||| |||||||||| Sbjct 20608 TCCTCTTTCCCAGTGTTCTTTTTCAACTCCAAAAAATCAAAGATATCCAGATGCCACGGT 20667 Query 72142 TCCAAGTATATGGC 72155 |||| ||| ||||| Sbjct 20668 TCCAGGTAGATGGC 20681 Score = 86.0 bits (94), Expect = 8e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 71142 TACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCAC 71201 ||| || || ||||| || | ||||| | ||||||||||| ||||| ||||| || | Sbjct 10963 TACCTGGAACTCTCCTGAGAGCACTCTCCTTGTGTAAATATTGCTGGTGTACGGCTCAAT 11022 Query 71202 TGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAG 71261 |||||||| || |||| || ||||| || || || || ||||| || | | ||| || Sbjct 11023 GGACTCATTGTTACCCAGGATCTGAGCTGTAGAGGCTGTTGGCATTGGAGAAATCAAGAG 11082 Query 71262 ACTATTTCTAAGACC 71276 ||| |||| || ||| Sbjct 11083 ACTGTTTCGAACACC 11097 >seq51 Length=4861936 Score = 96.9 bits (106), Expect = 5e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| || || | ||| || || || || | || ||||| || || ||||| | Sbjct 4860281 CCTCATCTCTGCTGATCAGTTCATTAGAGAAGGTCAAGCCAGGCATCAGACCTCGCTTCT 4860340 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | | ||| || |||| || ||||||||||| || |||||||||||||| || ||||| | Sbjct 4860341 TCAACCAGAAAATAGCAGCGAATGATCCAGAGAAAAAGATTCCTTCTACAGCAGCAAAAG 4860400 Query 42207 CAATAAGTCTCTCTCC 42222 | | || || ||| || Sbjct 4860401 CCACAATTCGCTCCCC 4860416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670961314555040