Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq94 132 5e-26 seq47 107 2e-18 >seq94 Length=3237593 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||||| | ||||| || | ||| | ||||||||||| || |||||||| || Sbjct 39011 GCCTCCTCTCAGACGCAGCACCAGATGGAGAGTAGATTCTTTCTGGATGTTGTAGTCTGA 39070 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || ||||| || || || |||||||||||| |||||||||| ||||| ||||| || Sbjct 39071 CAGTGTGCGGCCATCCTCTAGCTGTTTACCAGCAAAGATCAGACGCTGCTGGTCGGGTGG 39130 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||||||||| || || || | | || | ||||| ||||||| || Sbjct 39131 AATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTCTCAATGGTGTCACTGGGTTCCAC 39190 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | || | |||||||||||||| || || || || || ||||| Sbjct 39191 TTCCAGTGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 39238 Score = 116 bits (128), Expect = 4e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 142954 ATGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC 143013 || ||| |||| | ||||| || || || | ||| || ||||| || |||||||| || Sbjct 38324 ATTGCCCCCTCTCAGACGCAGCACCAAGTGCAGTGTGGACTCTTTCTGAATGTTGTAGTC 38383 Query 143014 GCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 143073 || ||||| || || || || || |||||| |||||||||| ||||| ||||| Sbjct 38384 AGACAGTGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGG 38443 Query 143074 AGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTC 143133 || |||||||||||||| ||||| || | | || | ||||| |||| || Sbjct 38444 GGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTC 38503 Query 143134 TACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||| |||| || | ||||||||||||| || || || || || |||||| Sbjct 38504 TACCTCAAGTGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATA 38555 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| | ||||| || | ||||| || || ||||| || || ||||| || | Sbjct 39468 CCCCCTCTCAGACGCAGCACCAGATGAAGAGTGGACTCTTTCTGGATATTGTAGTCTGAC 39527 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| ||||| || ||||| ||||| |||||||||| || || ||||| || Sbjct 39528 AGTGTGCGGCCTTCTTCCAGCTGTTTGCCAGCGAAGATCAGACGCTGTTGGTCGGGTGGA 39587 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||||||||| || || || | | ||| | ||||| ||||||| || Sbjct 39588 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTGGGTTCCACC 39647 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||||| |||| ||||| || || || ||||| Sbjct 39648 TCCAGTGTAATAGTCTTGCCAGTCAGGGTTTTCACAAAAATCTGCAT 39694 >seq47 Length=5048387 Score = 107 bits (118), Expect = 2e-18 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||||| || || || | ||| |||||||| || |||||||| || Sbjct 1632215 CCACCACGGAGACGCAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCAG-- 1632272 Query 143018 ATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 || ||| ||| ||||| | || || |||||| |||| ||||| || ||||| |||| Sbjct 1632273 ATAGTGTTCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAG 1632332 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | |||||||||||||| || || ||| | | || | ||||| | ||||| | Sbjct 1632333 GAATGCCTTCTTTGTCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGTTCAA 1632392 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||||| || | |||||||| ||||| || || || || || |||||| Sbjct 1632393 CTTCAAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATA 1632442 Score = 104 bits (114), Expect = 2e-17 Identities = 155/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||| || || || | ||| |||||||| || |||||||| || || ||| ||| Sbjct 1632455 CGCAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCAG--ATAGTGTTCGGC 1632512 Query 143030 --TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTT 143087 ||||| | || || |||||| |||| ||||| || ||||| ||||| |||||||||| Sbjct 1632513 CATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGAATGCCTTCTT 1632572 Query 143088 TGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCA 143147 |||| || || ||| | | || | ||||| | ||||| ||||||| || | Sbjct 1632573 TGTCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGTTCAACTTCAAGGGTAA 1632632 Query 143148 CCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||||||| ||||| || || || || || |||||| Sbjct 1632633 TGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATA 1632670 Score = 102 bits (112), Expect = 8e-17 Identities = 154/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||| || || || | ||| |||||||| || |||||||| || || ||| ||| Sbjct 1632683 CGCAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCAG--ATAGTGTTCGGC 1632740 Query 143030 --TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTT 143087 ||||| | || || |||||| |||| ||||| || ||||| ||||| |||||||||| Sbjct 1632741 CATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGAATGCCTTCTT 1632800 Query 143088 TGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCA 143147 |||| || || ||| | | || | ||||| | ||||| ||||||| || | Sbjct 1632801 TGTCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGTTCAACTTCAAGGGTAA 1632860 Query 143148 CCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||||| ||||| || || || || || ||||| Sbjct 1632861 TGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1632897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506880015833280