Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq94 122 6e-23 seq47 98.7 7e-16 >seq94 Length=3237593 Score = 122 bits (134), Expect = 6e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||| | | || | |||||| ||||| ||||| || || ||||| || Sbjct 39468 CCCCCTCTCAGACGCAGCACCAGATGAAGAGTGGACTCTTTCTGGATATTGTAGTCTGAC 39527 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| | |||||||||||| | |||| ||| ||||||||| |||| Sbjct 39528 AGTGTGCGGCCTTCTTCCAGCTGTTTGCCAGCGAAGATCAGACGCTGTTGGTCGGGTGGA 39587 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||||||||| || || ||| ||| |||| ||||| || || ||| || Sbjct 39588 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTGGGTTCCACC 39647 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | ||||| || || || ||||| ||||| |||||||| ||||| || Sbjct 39648 TCCAGTGTAATAGTCTTGCCAGTCAGGGTTTTCACAAAAATCTGCATTTT 39697 Score = 95.1 bits (104), Expect = 9e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| ||||||| | | || || || || ||||| ||||| || |||||||| || Sbjct 38326 TGCCCCCTCTCAGACGCAGCACCAAGTGCAGTGTGGACTCTTTCTGAATGTTGTAGTCAG 38385 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | | | || || | || |||||||| | |||| ||| || |||||| | Sbjct 38386 ACAGTGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGGG 38445 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| ||||||||||| |||||| ||| || | || ||||| || || |||| Sbjct 38446 GAATGCCTTCTTTGTCCTGGATTTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCTA 38505 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || | || ||||| || || ||||| || || ||||| || |||||| Sbjct 38506 CCTCAAGTGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATA 38555 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| ||||||| | | || | ||| || || || ||||| || |||||||| || Sbjct 39010 TGCCTCCTCTCAGACGCAGCACCAGATGGAGAGTAGATTCTTTCTGGATGTTGTAGTCTG 39069 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | | | || |||| ||||| ||||| | |||| ||| || |||||| || Sbjct 39070 ACAGTGTGCGGCCATCCTCTAGCTGTTTACCAGCAAAGATCAGACGCTGCTGGTCGGGTG 39129 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| ||||||||||| || || ||| ||| | || ||||| || || ||| | Sbjct 39130 GAATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTCTCAATGGTGTCACTGGGTTCCA 39189 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | || ||||| || || |||| || || ||||| || ||||| Sbjct 39190 CTTCCAGTGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 39238 >seq47 Length=5048387 Score = 98.7 bits (108), Expect = 7e-16 Identities = 149/211 (71%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 15167 GTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15226 ||||| ||||| || |||||||| || ||| ||| | ||||| || || |||||| Sbjct 1632701 GTGGATTCTTTCTGAATGTTGTAGTCAGATAGTGTTCGGCCATCTTCCAACTGCTTGCCA 1632760 Query 15227 GCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTT 15286 || | || | ||| ||||| || ||||| ||||||||||| || ||| || Sbjct 1632761 GCAAAGATGAGACGCTGTTGATCAGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTG 1632820 Query 15287 ACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTT 15346 || | || ||||| || || ||| || || | ||||||||| || || |||| || Sbjct 1632821 ACGTTCTCAATGGTGTCACTTGGTTCAACTTCAAGGGTAATGGTCTTGCCAGTCAAGGTC 1632880 Query 15347 TTTACAAAAATTTGCATATTTGAAAATAAAA 15377 || ||||| || ||||| ||||||| | ||| Sbjct 1632881 TTCACAAAGATCTGCAT-TTTGAAACTGAAA 1632910 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 15167 GTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15226 ||||| ||||| || |||||||| || ||| ||| | ||||| || || |||||| Sbjct 1632245 GTGGATTCTTTCTGAATGTTGTAGTCAGATAGTGTTCGGCCATCTTCCAACTGCTTGCCA 1632304 Query 15227 GCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTT 15286 || | || | ||| ||||| || ||||| ||||||||||| || ||| || Sbjct 1632305 GCAAAGATGAGACGCTGTTGATCAGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTG 1632364 Query 15287 ACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTT 15346 || | || ||||| || || ||| || || | ||||||||| || || |||| || Sbjct 1632365 ACGTTCTCAATGGTGTCACTTGGTTCAACTTCAAGGGTAATGGTCTTGCCAGTCAAGGTC 1632424 Query 15347 TTTACAAAAATTTGCATA 15364 || ||||| || |||||| Sbjct 1632425 TTCACAAAGATCTGCATA 1632442 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 15167 GTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15226 ||||| ||||| || |||||||| || ||| ||| | ||||| || || |||||| Sbjct 1632473 GTGGATTCTTTCTGAATGTTGTAGTCAGATAGTGTTCGGCCATCTTCCAACTGCTTGCCA 1632532 Query 15227 GCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTT 15286 || | || | ||| ||||| || ||||| ||||||||||| || ||| || Sbjct 1632533 GCAAAGATGAGACGCTGTTGATCAGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTG 1632592 Query 15287 ACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTT 15346 || | || ||||| || || ||| || || | ||||||||| || || |||| || Sbjct 1632593 ACGTTCTCAATGGTGTCACTTGGTTCAACTTCAAGGGTAATGGTCTTGCCAGTCAAGGTC 1632652 Query 15347 TTTACAAAAATTTGCATA 15364 || ||||| || |||||| Sbjct 1632653 TTCACAAAGATCTGCATA 1632670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362085604292964