Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq94 100 2e-16 >seq94 Length=3237593 Score = 100 bits (110), Expect = 2e-16 Identities = 168/241 (70%), Gaps = 8/241 (3%) Strand=Plus/Plus Query 33135 AATCTTCA--CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATT 33192 ||||| || |||||||| | ||||||||||| |||| ||| || || || || || || Sbjct 38774 AATCTGCATGCCGCCTCTCAGACGCAACACCAAGTGCAGTGTGGATTCCTTCTGGATGTT 38833 Query 33193 GTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTG 33252 ||| ||||||| || | || || | ||||| ||| ||| || | ||| ||||| Sbjct 38834 GTAGTCAGACAGTGTGCGACCATCTTCAAGCTGCTTGCCAGCAAAAATCAGACGCTGCTG 38893 Query 33253 GTCCGTGGGTATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTC 33309 || | ||| |||||||| || || | | | ||| || || ||| ||| ||||| Sbjct 38894 ATCTGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCC---TTCACGTTTTCAATGGTGTC 38950 Query 33310 GTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||||| ||| |||| || || || || || || | || || || ||||| ||||| Sbjct 38951 ACTGGGTTCAACCTCCAATGTGATGGTCTTGCCAGTCAAGGTCTTGACAAAAATCTGCAT 39010 Query 33370 G 33370 | Sbjct 39011 G 39011 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| | |||| |||||| |||| ||| |||||||| || || ||||| |||||| Sbjct 38328 CCCCCTCTCAGACGCAGCACCAAGTGCAGTGTGGACTCTTTCTGAATGTTGTAGTCAGAC 38387 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | || | || |||| ||||| ||| ||| || | ||| |||||||| | ||| Sbjct 38388 AGTGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGGGGA 38447 Query 33263 ATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 ||||||||||| || | | | ||| || || | | ||| ||||| |||| | Sbjct 38448 ATGCCTTCTTTGTCCTGGATTTTGGCC---TTCACGTTCTCAATGGTGTCACTGGGCTCT 38504 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || || || || || || || || || || || ||||| Sbjct 38505 ACCTCAAGTGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 38554 Score = 95.1 bits (104), Expect = 8e-15 Identities = 162/234 (69%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| | |||| ||||| ||| | || |||||||| || |||||||| || || Sbjct 39467 ACCCCCTCTCAGACGCAGCACCAGATGAAGAGTGGACTCTTTCTGGATATTGTAGTCTGA 39526 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 || || | || |||| || || ||| || || | ||| || ||||| | || Sbjct 39527 CAGTGTGCGGCCTTCTTCCAGCTGTTTGCCAGCGAAGATCAGACGCTGTTGGTCGGGTGG 39586 Query 33262 TATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 ||||||||||| || | | | ||| || || ||| ||| ||||| |||||| Sbjct 39587 AATGCCTTCTTTGTCCTGGATCTTAGCC---TTGACATTTTCAATGGTGTCACTGGGTTC 39643 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || ||||| || || || || || || || ||||| || ||||| ||||| || Sbjct 39644 CACCTCCAGTGTAATAGTCTTGCCAGTCAGGGTTTTCACAAAAATCTGCATTTT 39697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318695220297192