Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq47 114 1e-20 seq94 96.9 3e-15 >seq47 Length=5048387 Score = 114 bits (126), Expect = 1e-20 Identities = 161/224 (72%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGA--A 20053 || |||||| |||| ||| |||||||| || |||||||| || ||||| || | | Sbjct 1632685 CAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCAG--ATAGTGTTCGGCCA 1632742 Query 20054 TCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTG 20113 |||||||| || ||||| ||| | || || | ||||||||| || | |||||||||| Sbjct 1632743 TCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGAATGCCTTCTTTG 1632802 Query 20114 TCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATG 20173 || || || ||| || | ||| | || | ||||| ||| | ||||||| Sbjct 1632803 TCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGTTCAACTTCAAGGGTAATG 1632862 Query 20174 GTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTTTAAACT 20217 || ||||| ||||| || || ||||| || |||||||| ||||| Sbjct 1632863 GTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATTTTGAAACT 1632906 Score = 104 bits (114), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGA--A 20053 || |||||| |||| ||| |||||||| || |||||||| || ||||| || | | Sbjct 1632229 CAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCAG--ATAGTGTTCGGCCA 1632286 Query 20054 TCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTG 20113 |||||||| || ||||| ||| | || || | ||||||||| || | |||||||||| Sbjct 1632287 TCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGAATGCCTTCTTTG 1632346 Query 20114 TCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATG 20173 || || || ||| || | ||| | || | ||||| ||| | ||||||| Sbjct 1632347 TCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGTTCAACTTCAAGGGTAATG 1632406 Query 20174 GTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || ||||| ||||| || || ||||| || ||||| Sbjct 1632407 GTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1632441 Score = 104 bits (114), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGA--A 20053 || |||||| |||| ||| |||||||| || |||||||| || ||||| || | | Sbjct 1632457 CAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCAG--ATAGTGTTCGGCCA 1632514 Query 20054 TCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTG 20113 |||||||| || ||||| ||| | || || | ||||||||| || | |||||||||| Sbjct 1632515 TCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGAATGCCTTCTTTG 1632574 Query 20114 TCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATG 20173 || || || ||| || | ||| | || | ||||| ||| | ||||||| Sbjct 1632575 TCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGTTCAACTTCAAGGGTAATG 1632634 Query 20174 GTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || ||||| ||||| || || ||||| || ||||| Sbjct 1632635 GTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1632669 >seq94 Length=3237593 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 ||||||||| || ||||| ||||| || || |||||||| || || || | ||| Sbjct 38798 CAACACCAAGTGCAGTGTGGATTCCTTCTGGATGTTGTAGTCAGACAGTGTGCGACCATC 38857 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 ||| | || ||||| ||| |||| || | ||| ||||| ||| | |||||| ||||| Sbjct 38858 TTCAAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTC 38917 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 ||||| ||||| | ||| | || | ||||| |||| || ||||| Sbjct 38918 CTGGATTTTGGCCTTCACGTTTTCAATGGTGTCACTGGGTTCAACCTCCAATGTGATGGT 38977 Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| ||||| || ||||||||||| ||||| Sbjct 38978 CTTGCCAGTCAAGGTCTTGACAAAAATCTGCAT 39010 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||| | | || ||||| ||| || ||||||||||| || |||||||| || | Sbjct 39012 CCTCCTCTCAGACGCAGCACCAGATGGAGAGTAGATTCTTTCTGGATGTTGTAGTCTGAC 39071 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | || ||| || | ||||| || ||| | || || | ||| || ||| || Sbjct 39072 AGTGTGCGGCCATCCTCTAGCTGTTTACCAGCAAAGATCAGACGCTGCTGGTCGGGTGGA 39131 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | |||||||||||| || || || || | ||| | || | |||||| | Sbjct 39132 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTCTCAATGGTGTCACTGGGTTCCACT 39191 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| || ||||| ||||||||||| || |||||||| || ||||| Sbjct 39192 TCCAGTGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 39238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419478768702324