Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq121 105 6e-18 seq51 91.5 1e-13 >seq121 Length=2118225 Score = 105 bits (116), Expect = 6e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 ||||||| || || || ||||| || ||||| || || || ||||| ||||||||||| | Sbjct 638939 CTTCATCCCTGCTGATCAGCTCATTGGAAAAGGTAAGGCCTGGCATTAGCCCTCGTTTCT 638880 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | |||||| || ||||| || || || || |||||||| || ||||| || ||||| | Sbjct 638879 TCAGCCAAAAAATGGCAGCGAATGATCCTGAGAAAAATATCCCCTCAACAGCAGCAAAAG 638820 Query 13293 CTATCA 13298 ||| || Sbjct 638819 CTACCA 638814 >seq51 Length=4861936 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 12971 TCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATT 13030 || || | |||||||||||| |||||||| |||||| ||||||||||| |||||||||| Sbjct 4859138 TCCAGCATCAATCTGTCAGCTACAAACTCAATGTACCGTTTCATTAAAGTACAGTTCATT 4859197 Query 13031 CCTATTAATTTTACAGGCATAGCTTCTGTTAAAAA 13065 || || || || || || | ||| |||| ||||| Sbjct 4859198 CCGATCAAATTCACTGGTAAAGCCACTGTCAAAAA 4859232 Score = 86.0 bits (94), Expect = 5e-12 Identities = 80/99 (81%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 13421 ATATAAGTATCTATCAATAAG-CTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 || |||||||| || || ||| |||||||| || || |||||||| ||||| || ||||| Sbjct 4860911 ATGTAAGTATCAAT-AAGAAGACTATACATCTCAGAGTGAATATTCTCCATAGCAATTTG 4860969 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 ||||||||| ||||| | |||||| | | |||||||| Sbjct 4860970 GAAACCATAGAAACAGCGAGCCTCGGTGATTTGAACTTC 4861008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430871023912008