Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq94 194 4e-44 seq47 188 2e-42 seq135 114 3e-20 seq51 104 5e-17 >seq94 Length=3237593 Score = 194 bits (214), Expect = 4e-44 Identities = 184/235 (78%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || |||||||| || | || || ||||| | || || |||||||| ||||| ||||| Sbjct 39465 ATACCCCCTCTCAGACGCAGCACCAGATGAAGAGTGGACTCTTTCTGGATATTGTAGTCT 39524 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || ||||| ||||| || || || | |||||| || || Sbjct 39525 GACAGTGTGCGGCCTTCTTCCAGCTGTTTGCCAGCGAAGATCAGACGCTGTTGGTCGGGT 39584 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| ||||| ||||| || || |||||||| | ||| || || ||||| Sbjct 39585 GGAATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTGGGTTCC 39644 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGT 104564 ||||| |||||||||||||| ||||| || ||||| ||||| ||||||||||||| Sbjct 39645 ACCTCCAGTGTAATAGTCTTGCCAGTCAGGGTTTTCACAAAAATCTGCATTTTGT 39699 Score = 176 bits (194), Expect = 1e-38 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || |||||||| || | || || ||||| | || ||||||||||| || |||||||| Sbjct 38553 ATACCCCCTCTGAGACGCAGGACCAGATGCAGAGTGGATTCTTTCTGGATGTTATAGTCT 38612 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 ||||| || | || ||||| || || || || ||||| || || | ||||||||| || Sbjct 38613 GATAGGGTACGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGTTGATCGGGT 38672 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || ||||| ||||| ||||| || || |||||||| | ||| || || ||||| Sbjct 38673 GGGATACCCTCTTTGTCCTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTGGGTTCC 38732 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || ||||| || ||||| ||||| || ||||| ||||| |||||||| Sbjct 38733 ACTTCCAGTGTGATGGTCTTGCCAGTCAGGGTTTTGACAAAAATCTGCAT 38782 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || ||||| | |||||||||||||| || || ||||| Sbjct 39009 ATGCCTCCTCTCAGACGCAGCACCAGATGGAGAGTAGATTCTTTCTGGATGTTGTAGTCT 39068 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || || ||||| ||||| |||||||| || || | ||| || || || Sbjct 39069 GACAGTGTGCGGCCATCCTCTAGCTGTTTACCAGCAAAGATCAGACGCTGCTGGTCGGGT 39128 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| ||||| ||||| || || ||||| || | ||| || || ||||| Sbjct 39129 GGAATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTCTCAATGGTGTCACTGGGTTCC 39188 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || ||||| || ||||| || || | || || ||||| |||||||| Sbjct 39189 ACTTCCAGTGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 39238 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 |||||||| || | || || | || | ||| || ||||||||||| || |||||||| Sbjct 38328 CCCCCTCTCAGACGCAGCACCAAGTGCAGTGTGGACTCTTTCTGAATGTTGTAGTCAGAC 38387 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 || || | ||| || || || || || |||||||| || || | ||| || || || || Sbjct 38388 AGTGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGGGGA 38447 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || |||||||| ||||| || || || || || || || | ||| || || || |||||| Sbjct 38448 ATGCCTTCTTTGTCCTGGATTTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCTACC 38507 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || ||||| || || || || || ||||| |||||||| Sbjct 38508 TCAAGTGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 38554 Score = 145 bits (160), Expect = 2e-29 Identities = 151/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 104362 TGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCC 104421 ||| ||||| ||||| || || |||||||| || || | ||| ||||| || || || || Sbjct 38813 TGTGGATTCCTTCTGGATGTTGTAGTCAGACAGTGTGCGACCATCTTCAAGCTGCTTGCC 38872 Query 104422 AGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481 ||||||||| || | ||| ||||| || || || ||||| || ||||| || || || || Sbjct 38873 AGCAAAAATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTT 38932 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || ||||| | ||| || || ||||| ||||| | ||| || ||||| ||||| | || Sbjct 38933 CACGTTTTCAATGGTGTCACTGGGTTCAACCTCCAATGTGATGGTCTTGCCAGTCAAGGT 38992 Query 104542 TTTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 38993 CTTGACAAAAATCTGCAT 39010 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || | ||| | || || |||||||| || || ||||| Sbjct 39237 ATGCCTCCTCTGAGACGCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCT 39296 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || |||||||| || || ||||| || || || | ||||||||| || Sbjct 39297 GAAAGTGTGCGGCCATCTTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGATCTGGT 39356 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||| || || || || ||||| || | ||| || || |||||| Sbjct 39357 GGGATACCCTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCT 39416 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| ||||| || || || ||||| || || || ||||| |||||||| Sbjct 39417 ACCTCAAGTGTGATGGTTTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 39466 >seq47 Length=5048387 Score = 188 bits (208), Expect = 2e-42 Identities = 166/207 (80%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 |||||||| |||||||||||||| || ||||||||||| |||| || ||||| | || Sbjct 1632695 TGTAATGTGGATTCTTTCTGAATGTTGTAGTCAGATAGTGTTCGGCCATCTTCCAACTGC 1632754 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || |||||||| || || | ||||||||||||||| || |||||||| ||||| ||||| Sbjct 1632755 TTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGAATGCCTTCTTTGTCCTGGATCTTG 1632814 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| || || || | ||| || || ||||| || || || ||||| ||||| ||||| Sbjct 1632815 GCTTTGACGTTCTCAATGGTGTCACTTGGTTCAACTTCAAGGGTAATGGTCTTGCCAGTC 1632874 Query 104537 AGTGTTTTTACAAATATCTGCATTTTG 104563 | || || ||||| |||||||||||| Sbjct 1632875 AAGGTCTTCACAAAGATCTGCATTTTG 1632901 Score = 181 bits (200), Expect = 2e-40 Identities = 162/203 (80%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 |||||||| |||||||||||||| || ||||||||||| |||| || ||||| | || Sbjct 1632239 TGTAATGTGGATTCTTTCTGAATGTTGTAGTCAGATAGTGTTCGGCCATCTTCCAACTGC 1632298 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || |||||||| || || | ||||||||||||||| || |||||||| ||||| ||||| Sbjct 1632299 TTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGAATGCCTTCTTTGTCCTGGATCTTG 1632358 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| || || || | ||| || || ||||| || || || ||||| ||||| ||||| Sbjct 1632359 GCTTTGACGTTCTCAATGGTGTCACTTGGTTCAACTTCAAGGGTAATGGTCTTGCCAGTC 1632418 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 | || || ||||| |||||||| Sbjct 1632419 AAGGTCTTCACAAAGATCTGCAT 1632441 Score = 181 bits (200), Expect = 2e-40 Identities = 162/203 (80%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 |||||||| |||||||||||||| || ||||||||||| |||| || ||||| | || Sbjct 1632467 TGTAATGTGGATTCTTTCTGAATGTTGTAGTCAGATAGTGTTCGGCCATCTTCCAACTGC 1632526 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || |||||||| || || | ||||||||||||||| || |||||||| ||||| ||||| Sbjct 1632527 TTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGAATGCCTTCTTTGTCCTGGATCTTG 1632586 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| || || || | ||| || || ||||| || || || ||||| ||||| ||||| Sbjct 1632587 GCTTTGACGTTCTCAATGGTGTCACTTGGTTCAACTTCAAGGGTAATGGTCTTGCCAGTC 1632646 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 | || || ||||| |||||||| Sbjct 1632647 AAGGTCTTCACAAAGATCTGCAT 1632669 >seq135 Length=1930211 Score = 114 bits (126), Expect = 3e-20 Identities = 123/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 78487 AGCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCAT 78546 ||| || |||||||| ||| |||| || ||| | || || | || || | || ||||| Sbjct 82880 AGCCTTGTGGTGGTACTATGTCTCAAAGGGAGTTGAGTATATGGACACAGTGTTTTTCAT 82821 Query 78547 CCTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTT 78606 | | | ||||||||||| || | || || || ||||| ||||||||||| || ||||| Sbjct 82820 CTTGAGGAAGAAATTTAACCAGGTCAGCTTCCTGCATGTGTATCATCATTTCACGATGTT 82761 Query 78607 TACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAA 78649 ||| || | ||||| || || |||||| |||||||||| ||| Sbjct 82760 TACCCTGTGGTGGATTGGAATCAAATGGGTCGCAGGAGGTCAA 82718 >seq51 Length=4861936 Score = 104 bits (114), Expect = 5e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 || |||||||| ||||||||||| || || || || || || || || ||||| || ||| Sbjct 4860404 GTGGCTTTTGCTGCTGTAGAAGGAATCTTTTTCTCTGGATCATTCGCTGCTATTTTCTGG 4860345 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 |||||||| |||| || ||||| || || || |||||||| ||| |||| ||||| || Sbjct 4860344 TTGAAGAAGCGAGGTCTGATGCCTGGCTTGACCTTCTCTAATGAACTGATCAGCAGAGAT 4860285 Query 269258 GA 269259 || Sbjct 4860284 GA 4860283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151085592400432