Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq41 111 2e-19 seq100 93.3 6e-14 >seq41 Length=5334932 Score = 111 bits (122), Expect = 2e-19 Identities = 177/254 (70%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || || | ||||||||| ||||||| || || || || || ||| || || || Sbjct 1839844 TCACCTATCAGGATGAGTCGGCTGGTCTGGAAGAGCTGCTCATCCTCCCAGTCGGGGTGC 1839903 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || ||||| | || ||||||| |||||| |||| |||||||| || ||||||||| Sbjct 1839904 TCGACTTTCAAGATGTCACACACTCGGTTGTGCTCCCGCAGCCAGATCGTTGCGTACATC 1839963 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 || || || || ||||| ||||| || || || ||||| | |||| | || ||| Sbjct 1839964 ATCAGGCCTGGAACCAGACCAAAGAATTCCTGGCCCACAGCAAAGCGCAAGTGCTCCGGC 1840023 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCA 9849 || | ||||| ||| |||||| || || | || || || ||| ||||| | || Sbjct 1840024 ACATGAGGAGGGTAGGTCATGTCTACGGGGGCTTCCTTTACGATGGGAGGATAAACGTCT 1840083 Query 9850 CCGTCAATAATCTG 9863 || | |||| ||| Sbjct 1840084 CCATTGATAACCTG 1840097 Score = 93.3 bits (102), Expect = 6e-14 Identities = 162/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 8741 TTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAG 8800 || ||||| |||| || || | || || || ||||||||||||||||| || ||| Sbjct 1837821 TTCACGATGTCAAAGCCGACATTCCCACCAAAAGTGCTGGGTTTCCAGTATTGAGGCGAG 1837880 Query 8801 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTC 8860 ||||| ||| |||| | || || | || || || || |||| ||||| ||| | Sbjct 1837881 CAGATAGGGTTTCCCATTAAACCCTTCAAAGAGAAAGGGGCGCCCATCTCGACCATGGTT 1837940 Query 8861 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACA 8920 || || || ||||| || | || || || | || | || | ||||||||||| Sbjct 1837941 TCTCCAAAAATGGCTCCAGGTCTTGGTTTCTCTATCATCAGACCAGGGTACAACTCCATT 1838000 Query 8921 GCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976 || || || ||||| || || |||| || || || || ||||| || || ||||| Sbjct 1838001 GCATCAATATCTCCATACAGTTCCCTCAGCTCAGCTGCCATTTCTTTCTCACCTGT 1838056 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 10088 ||||||||||| || | |||||||||||||| | ||||| | || ||| ||||| Sbjct 1840547 CTTACCCCATGACCTAACCCTTTAGTGAAGGCTGCTCCTCGGCTCTGGTCTGTCTTAAAA 1840606 Query 10089 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 10148 ||||| || |||||||| || | || ||||||||||| | |||||| ||| ||||| Sbjct 1840607 AACTGATGGGTGAAATGCTGTGCGAAGAAGGCAAACATCATGTTGGTCTTCTGAGGATCA 1840666 Query 10149 GGAGTGAAGGTCCTCC 10164 || |||| || ||| Sbjct 1840667 GGGATGAACTTCTTCC 1840682 >seq100 Length=3005590 Score = 93.3 bits (102), Expect = 6e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| || || || || || | ||| ||||| || ||||||| | ||||| ||| Sbjct 1381187 GTCTGGAAGAGCTGCTCATCGCCCCAGGTGGGATGCTCCTGTTTCAGGATGTCGCAGACT 1381128 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAA 9752 |||||||| |||| |||||||| |||||||||||||| ||||| || | |||||| || Sbjct 1381127 CTGTTGTGCTCCCGTAGCCAGATGGTAGCGTACATCATCAGACCCGGGATCAGGCCGAA 1381069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708337005501760