Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq94 129 5e-25 seq47 116 3e-21 >seq94 Length=3237593 Score = 129 bits (142), Expect = 5e-25 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||| |||| ||||||||||| || || || || || | ||| || | | Sbjct 38328 CCCCCTCTCAGACGCAGCACCAAGTGCAGTGTGGACTCTTTCTGAATGTTGTAGT--CAG 38385 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | ||||| || |||||||||||| || || ||||||| | | ||||| || || | Sbjct 38386 ACAGTGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGGG 38445 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 |||| ||||||||||| | ||||| ||||| ||| | | |||||| | | || | Sbjct 38446 GAATGCCTTCTTTGTCCTGGATTTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCTA 38505 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | |||| |||||||| || || || || || ||||||||||||||||| Sbjct 38506 CCTCAAGTGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 38554 Score = 123 bits (136), Expect = 2e-23 Identities = 175/244 (72%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || || ||||||| |||||||||||||||| || |||||||| || | Sbjct 38771 AAAAATCTGCATGCCGCCTCTCAGACGCAACACCAAGTGCAGTGTGGATTCCTTCTGGAT 38830 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 ||| || | | | ||||| || ||| || ||||| || || |||| || | | Sbjct 38831 GTTGTAGT--CAGACAGTGTGCGACCATCTTCAAGCTGCTTGCCAGCAAAAATCAGACGC 38888 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 ||||||||||| ||||| ||||| ||||| | ||||| ||||| ||| | | ||| Sbjct 38889 TGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACGTTTTCAATGGTG 38948 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 ||| | | || || || | |||||||| || ||||| | || || ||||| |||||| Sbjct 38949 TCACTGGGTTCAACCTCCAATGTGATGGTCTTGCCAGTCAAGGTCTTGACAAAAATCTGC 39008 Query 95006 ATGC 95009 |||| Sbjct 39009 ATGC 39012 Score = 122 bits (134), Expect = 8e-23 Identities = 172/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || |||||||||| |||| ||||| || | ||||||||| || || | Sbjct 38999 AAAAATCTGCATGCCTCCTCTCAGACGCAGCACCAGATGGAGAGTAGATTCTTTCTGGAT 39058 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| || || || ||| | |||||| |||||||| || ||||||| | | || Sbjct 39059 GTTGTAGTCTGACAGTGTGCGGCCATCCTCTAGCTGTTTACCAGCAAAGATCAGACGCTG 39118 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||| || || ||||| ||||||||||| | || || |||||||| | | ||||| Sbjct 39119 CTGGTCGGGTGGAATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTCTCAATGGTGTC 39178 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | | || || || | |||||||| || || || | || || |||||||||||||| Sbjct 39179 ACTGGGTTCCACTTCCAGTGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 39238 Query 95008 GC 95009 || Sbjct 39239 GC 39240 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||| | |||| |||||| || | ||| || || || || | ||| || || | Sbjct 39240 CCTCCTCTGAGACGCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTC--TG 39297 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | ||||| | ||| || ||||| || || | ||||| | | || |||||||| | Sbjct 39298 AAAGTGTGCGGCCATCTTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGATCTGGTG 39357 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | ||||| || ||||| | ||||| ||||| || | | |||||| | | || | Sbjct 39358 GGATACCCTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCTA 39417 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | |||| ||||||||||| ||||| || || ||||||||||||||||| Sbjct 39418 CCTCAAGTGTGATGGTTTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 39466 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||| |||| ||||| || | ||| || || || || | || || || | Sbjct 39468 CCCCCTCTCAGACGCAGCACCAGATGAAGAGTGGACTCTTTCTGGATATTGTAGTCTGAC 39527 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | || ||||||||||| || | ||||| | | || || || || ||| Sbjct 39528 AGTGTGCGGCCTTCTTCCAGCTGTTTGCCAGCGAAGATCAGACGCTGTTGGTCGGGTGGA 39587 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||||||||| | || || |||||||| | | |||||| | | || || Sbjct 39588 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTGGGTTCCACC 39647 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || || || || ||||| || ||||||||||| |||||||| Sbjct 39648 TCCAGTGTAATAGTCTTGCCAGTCAGGGTTTTCACAAAAATCTGCAT 39694 >seq47 Length=5048387 Score = 116 bits (128), Expect = 3e-21 Identities = 176/245 (72%), Gaps = 8/245 (3%) Strand=Plus/Plus Query 94766 TTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGC 94825 |||||||| | | ||| || | | |||| ||||||||| || || ||||| || || Sbjct 1632202 TTAAAATT--AAAATCCACCACGGAGACGCAGCACCAAGTGTAATGTGGATTCTTTCTGA 1632259 Query 94826 ACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATC 94883 | ||| || || |||||||| | ||| |||| ||| || || ||||||| | | Sbjct 1632260 ATGTTGTAGTCAG--ATAGTGTTCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGAC 1632317 Query 94884 TTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAG 94943 || ||||| |||||||| ||||||||||| | || || || |||||| | | | Sbjct 1632318 GCTGTTGATCAGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTGACGTTCTCAATGG 1632377 Query 94944 TGTCAGCGTGG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATC 95002 ||||| | ||| || || |||| || ||||| || ||||| | || |||||||||||| Sbjct 1632378 TGTCA-CTTGGTTCAACTTCAAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATC 1632436 Query 95003 TGCAT 95007 ||||| Sbjct 1632437 TGCAT 1632441 Score = 116 bits (128), Expect = 3e-21 Identities = 160/219 (73%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 ||||| ||||||||| || || ||||| || || | ||| || || |||||||| | Sbjct 1632454 TCGCAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCAG--ATAGTGTTCGG 1632511 Query 94852 --ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCT 94909 ||| |||| ||| || || ||||||| | | || ||||| |||||||| |||||| Sbjct 1632512 CCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGAATGCCTTCT 1632571 Query 94910 TTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGT 94968 ||||| | || || || |||||| | | |||||| | ||| || || |||| || Sbjct 1632572 TTGTCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCA-CTTGGTTCAACTTCAAGGGT 1632630 Query 94969 GATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || ||||| | || ||||||||||||||||| Sbjct 1632631 AATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1632669 Score = 116 bits (128), Expect = 3e-21 Identities = 160/219 (73%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 ||||| ||||||||| || || ||||| || || | ||| || || |||||||| | Sbjct 1632682 TCGCAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCAG--ATAGTGTTCGG 1632739 Query 94852 --ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCT 94909 ||| |||| ||| || || ||||||| | | || ||||| |||||||| |||||| Sbjct 1632740 CCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGAATGCCTTCT 1632799 Query 94910 TTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGT 94968 ||||| | || || || |||||| | | |||||| | ||| || || |||| || Sbjct 1632800 TTGTCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCA-CTTGGTTCAACTTCAAGGGT 1632858 Query 94969 GATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || ||||| | || ||||||||||||||||| Sbjct 1632859 AATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1632897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448172380417440