Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3609 168 1e-37 seq3556 168 1e-37 seq1797 168 1e-37 seq1429 168 1e-37 seq18454 118 2e-22 seq16577 118 2e-22 >seq3609 Length=6160 Score = 168 bits (186), Expect = 1e-37 Identities = 183/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| |||| | || || ||||||||||| || |||||||| ||||| || Sbjct 4040 CGCTAAGCGTCACCGCAAAGTGCTCCGTGATAACATCCAGGGCATCACCAAACCAGCCAT 3981 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || ||||| ||||||||||| |||| || || |||| || |||| Sbjct 3980 CCGCCGCCTGGCGCGGCGTGGCGGAGTCAAGCGCATCTCCGGCCTGATCTACGAGGAGAC 3921 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| || ||| ||||| || ||| || || Sbjct 3920 CCGCGGGGTGCTGAAGGTTTTCCTGGAGAATGTGATCAGGGATGCGGTCACCTACACGGA 3861 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| |||||||| | || || || ||||||| || || Sbjct 3860 GCACGCCAAGCGCAAGACCGTCACCGCCATGGATGTGGTGTACGCTCTGAAACGCCAGGG 3801 Query 16672 CCG 16674 ||| Sbjct 3800 CCG 3798 >seq3556 Length=6243 Score = 168 bits (186), Expect = 1e-37 Identities = 183/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| |||| | || || ||||||||||| || |||||||| ||||| || Sbjct 1616 CGCTAAGCGTCACCGCAAAGTGCTCCGTGATAACATCCAGGGCATCACCAAACCAGCCAT 1675 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || ||||| ||||||||||| |||| || || |||| || |||| Sbjct 1676 CCGCCGCCTGGCGCGGCGTGGCGGAGTCAAGCGCATCTCCGGCCTGATCTACGAGGAGAC 1735 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| || ||| ||||| || ||| || || Sbjct 1736 CCGCGGGGTGCTGAAGGTTTTCCTGGAGAATGTGATCAGGGATGCGGTCACCTACACGGA 1795 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| |||||||| | || || || ||||||| || || Sbjct 1796 GCACGCCAAGCGCAAGACCGTCACCGCCATGGATGTGGTGTACGCTCTGAAACGCCAGGG 1855 Query 16672 CCG 16674 ||| Sbjct 1856 CCG 1858 >seq1797 Length=12067 Score = 168 bits (186), Expect = 1e-37 Identities = 183/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| |||| | || || ||||||||||| || |||||||| ||||| || Sbjct 288 CGCTAAGCGTCACCGCAAAGTGCTCCGTGATAACATCCAGGGCATCACCAAACCAGCCAT 229 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || ||||| ||||||||||| |||| || || |||| || |||| Sbjct 228 CCGCCGCCTGGCGCGGCGTGGCGGAGTCAAGCGCATCTCCGGCCTGATCTACGAGGAGAC 169 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| || ||| ||||| || ||| || || Sbjct 168 CCGCGGGGTGCTGAAGGTTTTCCTGGAGAATGTGATCAGGGATGCGGTCACCTACACGGA 109 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| |||||||| | || || || ||||||| || || Sbjct 108 GCACGCCAAGCGCAAGACCGTCACCGCCATGGATGTGGTGTACGCTCTGAAACGCCAGGG 49 Query 16672 CCG 16674 ||| Sbjct 48 CCG 46 >seq1429 Length=14987 Score = 168 bits (186), Expect = 1e-37 Identities = 183/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| |||| | || || ||||||||||| || |||||||| ||||| || Sbjct 14700 CGCTAAGCGTCACCGCAAAGTGCTCCGTGATAACATCCAGGGCATCACCAAACCAGCCAT 14759 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || ||||| ||||||||||| |||| || || |||| || |||| Sbjct 14760 CCGCCGCCTGGCGCGGCGTGGCGGAGTCAAGCGCATCTCCGGCCTGATCTACGAGGAGAC 14819 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| || ||| ||||| || ||| || || Sbjct 14820 CCGCGGGGTGCTGAAGGTTTTCCTGGAGAATGTGATCAGGGATGCGGTCACCTACACGGA 14879 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| |||||||| | || || || ||||||| || || Sbjct 14880 GCACGCCAAGCGCAAGACCGTCACCGCCATGGATGTGGTGTACGCTCTGAAACGCCAGGG 14939 Query 16672 CCG 16674 ||| Sbjct 14940 CCG 14942 >seq18454 Length=1058 Score = 118 bits (130), Expect = 2e-22 Identities = 172/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||| | || |||| | || |||| || ||||| || ||||||||||| || || Sbjct 279 CGCCAAGAGACACCGCAAAGTGCTCAGAGACAATATCCAGGGCATCACCAAGCCCGCCAT 220 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || || || || || || |||||||| |||| || || |||| || |||| Sbjct 219 CCGCCGCCTCGCCCGCCGCGGCGGCGTCAAGCGCATCTCGGGTCTGATCTACGAGGAGAC 160 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || |||||| ||||||| ||| ||| ||| || | | || ||||| Sbjct 159 CCGCGGGGTGTTGAAGGTCTTCCTGGAGAACGTGATCAGGGACTCGGTGACTTACACCGA 100 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || || ||||| |||||| | ||||| | || ||||| |||| || || || Sbjct 99 ACACGCCAAGCGCAAGACGGTCACCGCTATGGACGTGGTTTATGCTCTGAAGCGCCAGGG 40 Query 16672 CCG 16674 ||| Sbjct 39 CCG 37 >seq16577 Length=1108 Score = 118 bits (130), Expect = 2e-22 Identities = 172/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||| | || |||| | || |||| || ||||| || ||||||||||| || || Sbjct 1050 CGCCAAGAGACACCGCAAAGTGCTCAGAGACAATATCCAGGGCATCACCAAGCCCGCCAT 991 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || || || || || || |||||||| |||| || || |||| || |||| Sbjct 990 CCGCCGCCTCGCCCGCCGCGGCGGCGTCAAGCGCATCTCGGGTCTGATCTACGAGGAGAC 931 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || |||||| ||||||| ||| ||| ||| || | | || ||||| Sbjct 930 CCGCGGGGTGTTGAAGGTCTTCCTGGAGAACGTGATCAGGGACTCGGTGACTTACACCGA 871 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || || ||||| |||||| | ||||| | || ||||| |||| || || || Sbjct 870 ACACGCCAAGCGCAAGACGGTCACCGCTATGGACGTGGTTTATGCTCTGAAGCGCCAGGG 811 Query 16672 CCG 16674 ||| Sbjct 810 CCG 808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79055813034372