Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq94 113 4e-20 seq47 113 4e-20 >seq94 Length=3237593 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| | ||||| || | ||||| | ||| | ||| | | Sbjct 38782 ATGCAGATTTTTGTCAAAACCCTGACTGGCAAGACCATCACACTGGAAGTGGAACCCAGT 38723 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | ||||| ||||| |||||||| || || || ||||||||| Sbjct 38722 GACACCATTGAAAATGTCAAGGCTAAGATCCAGGACAAAGAGGGTATCCCACCCGATCAA 38663 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | || || | | |||||| || || ||||||| | | | | ||||||||| Sbjct 38662 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACCCTATCAGACTATAAC 38603 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || |||||||| ||| | |||||||||||| | || ||||| || Sbjct 38602 ATCCAGAAAGAATCCACTCTGCATCTGGTCCTGCGTCTCAGAGGGGG 38556 Score = 105 bits (116), Expect = 6e-18 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || || || || || | ||||| | ||| | ||| | | Sbjct 39238 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACACTGGAAGTGGAACCCAGT 39179 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | ||||| ||||| ||||||||||| || || ||||| || Sbjct 39178 GACACCATTGAGAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCACCCGACCAG 39119 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA-AC-GTCAGCGACTATA 26946 || | || || | | || ||||| || || |||| | | || ||||| |||| | Sbjct 39118 CAGCGTCTGATCTTTGCTGGTAAACAGCTAGAGGATGGCCGCACACTGTCAG--ACTACA 39061 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||| || |||||||||||| |||||||||| ||| | || |||||||| Sbjct 39060 ACATCCAGAAAGAATCTACTCTCCATCTGGTGCTGCGTCTGAGAGGAGG 39012 Score = 102 bits (112), Expect = 8e-17 Identities = 179/257 (70%), Gaps = 4/257 (2%) Strand=Plus/Minus Query 26741 TTATATAAGTACTTTTTAGTCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAA 26800 ||| | || | | ||| || |||||||||||| | ||||| ||||| | ||||| || Sbjct 39722 TTAAAAAATTGCCTTTCAGAAAAACAAAATGCAGATTTTTGTGAAAACCCTGACTGGCAA 39663 Query 26801 ATCGATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTAC 26860 | || || | || | ||| | | |||||||| || | ||||| ||||| Sbjct 39662 GACTATTACACTGGAGGTGGAACCCAGTGACACCATTGAAAATGTCAAGGCTAAGATCCA 39603 Query 26861 CGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGA 26920 ||||||||||| || || ||||| ||||| | || || | || |||||||| || || Sbjct 39602 GGACAAAGAAGGCATTCCACCCGACCAACAGCGTCTGATCTTCGCTGGCAAACAGCTGGA 39543 Query 26921 AGATGATAG-AAAC-GTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTC 26978 ||| | | | || |||| ||||| || || || ||||| || ||| | |||||||| Sbjct 39542 AGAAGGCCGCACACTGTCA--GACTACAATATCCAGAAAGAGTCCACTCTTCATCTGGTG 39485 Query 26979 CTGAGACTTAGAGGAGG 26995 ||| | || ||||| || Sbjct 39484 CTGCGTCTGAGAGGGGG 39468 >seq47 Length=5048387 Score = 113 bits (124), Expect = 4e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 ||||||||| | ||||| || || || ||||| || | || ||| | ||| | ||| | Sbjct 1632901 CAAAATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTTGAACC 1632842 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 || |||||||| ||| | |||||| ||||| ||||||||||| || ||||| || Sbjct 1632841 AAGTGACACCATTGAGAACGTCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGA 1632782 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 |||||| | ||||| | | ||||| || | ||||||| ||| | ||||| Sbjct 1632781 TCAACAGCGTCTCATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGAACACTATCTGACTA 1632722 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACT 26986 |||||||| |||||||| || | || |||| ||| |||| Sbjct 1632721 CAACATTCAGAAAGAATCCACATTACACTTGGTGCTGCGACT 1632680 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || || ||||| || | || ||| | ||| | ||| ||| Sbjct 1632669 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTTGAACCAAGT 1632610 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | |||||| ||||| ||||||||||| || ||||| |||||| Sbjct 1632609 GACACCATTGAGAACGTCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGATCAA 1632550 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | | ||||| || | ||||||| ||| | ||||| ||| Sbjct 1632549 CAGCGTCTCATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGAACACTATCTGACTACAAC 1632490 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACT 26986 ||||| |||||||| || | || |||| ||| |||| Sbjct 1632489 ATTCAGAAAGAATCCACATTACACTTGGTGCTGCGACT 1632452 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || || ||||| || | || ||| | ||| | ||| ||| Sbjct 1632441 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTTGAACCAAGT 1632382 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | |||||| ||||| ||||||||||| || ||||| |||||| Sbjct 1632381 GACACCATTGAGAACGTCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGATCAA 1632322 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | | ||||| || | ||||||| ||| | ||||| ||| Sbjct 1632321 CAGCGTCTCATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGAACACTATCTGACTACAAC 1632262 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 ||||| |||||||| || | || |||| ||| Sbjct 1632261 ATTCAGAAAGAATCCACATTACACTTGGTGCTG 1632229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478535530530880