Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq47 120 3e-22 seq94 107 2e-18 >seq47 Length=5048387 Score = 120 bits (132), Expect = 3e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||||||||| | ||||| || || || ||||| || | |||||| | ||||| || | Sbjct 1632901 CAAAATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTTGAACC 1632842 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | |||||||| ||| | |||||| ||||| |||||||||||||| ||||| || Sbjct 1632841 AAGTGACACCATTGAGAACGTCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGA 1632782 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||||||| | || || | | |||||||| | ||||||| | ||| | || || Sbjct 1632781 TCAACAGCGTCTCATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGAACACTATCTGACTA 1632722 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 |||||||| |||||||| ||| | || || ||| Sbjct 1632721 CAACATTCAGAAAGAATCCACATTACACTTGGTG 1632688 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || ||||| || | |||||| | ||||| || | | Sbjct 1632441 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTTGAACCAAGT 1632382 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | |||||| ||||| |||||||||||||| ||||| |||||| Sbjct 1632381 GACACCATTGAGAACGTCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGATCAA 1632322 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | | |||||||| | ||||||| | ||| | || || ||| Sbjct 1632321 CAGCGTCTCATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGAACACTATCTGACTACAAC 1632262 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||| |||||||| ||| | || || ||| Sbjct 1632261 ATTCAGAAAGAATCCACATTACACTTGGTG 1632232 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || ||||| || | |||||| | ||||| || | | Sbjct 1632669 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTTGAACCAAGT 1632610 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | |||||| ||||| |||||||||||||| ||||| |||||| Sbjct 1632609 GACACCATTGAGAACGTCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGATCAA 1632550 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | | |||||||| | ||||||| | ||| | || || ||| Sbjct 1632549 CAGCGTCTCATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGAACACTATCTGACTACAAC 1632490 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||| |||||||| ||| | || || ||| Sbjct 1632489 ATTCAGAAAGAATCCACATTACACTTGGTG 1632460 >seq94 Length=3237593 Score = 107 bits (118), Expect = 2e-18 Identities = 180/257 (70%), Gaps = 4/257 (2%) Strand=Plus/Minus Query 23963 TTATATAAGTACTTTTTAGCCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAA 24022 ||| | || | | ||| || |||||||||||| | ||||| ||||| | ||||| || Sbjct 39722 TTAAAAAATTGCCTTTCAGAAAAACAAAATGCAGATTTTTGTGAAAACCCTGACTGGCAA 39663 Query 24023 ATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTAC 24082 | ||||| | || || || ||| |||||||| || | ||||| ||||| Sbjct 39662 GACTATTACACTGGAGGTGGAACCCAGTGACACCATTGAAAATGTCAAGGCTAAGATCCA 39603 Query 24083 CGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGA 24142 |||||||||||||| || ||||| |||||| | ||||| | || ||||| || || || Sbjct 39602 GGACAAAGAAGGCATTCCACCCGACCAACAGCGTCTGATCTTCGCTGGCAAACAGCTGGA 39543 Query 24143 AGATGACAG-AAAC-GTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||| | | | | || |||| || || || || || ||||| || || ||||| | ||| Sbjct 39542 AGAAGGCCGCACACTGTCA--GACTACAATATCCAGAAAGAGTCCACTCTTCATCTGGTG 39485 Query 24201 TTAAGATTGAGAGGAGG 24217 | | ||||||| || Sbjct 39484 CTGCGTCTGAGAGGGGG 39468 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | ||||| || | || || | ||||| || ||| Sbjct 38782 ATGCAGATTTTTGTCAAAACCCTGACTGGCAAGACCATCACACTGGAAGTGGAACCCAGT 38723 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| ||||| |||||||| || || || ||||||||| Sbjct 38722 GACACCATTGAAAATGTCAAGGCTAAGATCCAGGACAAAGAGGGTATCCCACCCGATCAA 38663 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | | ||||||||| || ||||||| | | | | | || |||||| Sbjct 38662 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACCCTATCAGACTATAAC 38603 Query 24171 ATTCAAAAAGAATCTAC 24187 || || |||||||| || Sbjct 38602 ATCCAGAAAGAATCCAC 38586 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || || || || | || || | ||||| || ||| Sbjct 39238 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACACTGGAAGTGGAACCCAGT 39179 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | ||||| ||||| |||||||||||||| || ||||| || Sbjct 39178 GACACCATTGAGAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCACCCGACCAG 39119 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA-AC-GTCAGCGATTATA 24168 ||| | ||||| | | || || || || || |||| | | | || ||||| | || | Sbjct 39118 CAGCGTCTGATCTTTGCTGGTAAACAGCTAGAGGATGGCCGCACACTGTCAG--ACTACA 39061 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||| || ||||||||||| | ||| | ||| | | |||||||||| Sbjct 39060 ACATCCAGAAAGAATCTACTCTCCATCTGGTGCTGCGTCTGAGAGGAGG 39012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429824894326620