Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq797 107 2e-18 seq51 86.0 8e-12 >seq797 Length=31933 Score = 107 bits (118), Expect = 2e-18 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| || || || ||||| || || |||||| || | || ||||| || ||||||| Sbjct 10465 TCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTAGGTTCTGCAATGTGGATAT 10524 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 |||| || ||||| ||||||||| |||| || | || || ||||| || ||||| || | Sbjct 10525 TCATCGACTGACTCTGATCGATGTAGGCACCGCGATCAGCTGCCATCTTAATAATAGTTT 10584 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 62085 | |||| |||||||| | |||||| || | | ||| | ||| || || Sbjct 10585 TCTGTGAGATTTCCCAGACAGTTTTGTACAGTAACTTGAGATCATCAGG 10633 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 62191 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62250 ||| || || ||||| || | ||||||| ||||||||||| ||||| ||||| || | Sbjct 10963 TACCTGGAACTCTCCTGAGAGCACTCTCCTTGTGTAAATATTGCTGGTGTACGGCTCAAT 11022 Query 62251 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62310 |||||||| || |||| || ||||| || || || || ||||| || | | ||| | Sbjct 11023 GGACTCATTGTTACCCAGGATCTGAGCTGTAGAGGCTGTTGGCATTGGAGAAATCAAGAG 11082 Query 62311 ACTATTTCTAAGACCGTA 62328 ||| |||| || |||||| Sbjct 11083 ACTGTTTCGAACACCGTA 11100 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 63071 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63130 || ||||||||||| |||||||||||||| || || || ||||| | | ||| || Sbjct 20548 ACACGTTTCATAAAAAGATCAGGAATCCAGAGGGCGTAGAAGAGATCCCGTGCTCTCTGC 20607 Query 63131 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63190 ||||| || || || |||||||| | || | || | | ||||| |||||||||| Sbjct 20608 TCCTCTTTCCCAGTGTTCTTTTTCAACTCCAAAAAATCAAAGATATCCAGATGCCACGGT 20667 Query 63191 TCCAAGTATATGGC 63204 |||| ||| ||||| Sbjct 20668 TCCAGGTAGATGGC 20681 >seq51 Length=4861936 Score = 86.0 bits (94), Expect = 8e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 32931 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 32990 || |||||||| | |||||||||||| || || ||||| || || || || ||||| || Sbjct 4860914 TAAGTATCAATAAGAAGACTATACATCTCAGAGTGAATATTCTCCATAGCAATTTGGAAA 4860973 Query 32991 CCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33040 || ||||| || | ||||||||| || || |||||| || || ||||| Sbjct 4860974 CCATAGAAACAGCGAGCCTCGGTGATTTGAACTTCTTGACTGAAGCGTTC 4861023 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| || || | ||| || || || || | || ||||| || || ||||| | Sbjct 4860281 CCTCATCTCTGCTGATCAGTTCATTAGAGAAGGTCAAGCCAGGCATCAGACCTCGCTTCT 4860340 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | | ||| || || | || ||||||||||| || || ||||||||||| || ||||| | Sbjct 4860341 TCAACCAGAAAATAGCAGCGAATGATCCAGAGAAAAAGATTCCTTCTACAGCAGCAAAAG 4860400 Query 32803 CAATAAGTCTCTCTCC 32818 | | || || ||| || Sbjct 4860401 CCACAATTCGCTCCCC 4860416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633464055838400