Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq94 145 7e-30 seq47 114 1e-20 >seq94 Length=3237593 Score = 145 bits (160), Expect = 7e-30 Identities = 176/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||||| || |||||||| | || || ||| | | Sbjct 38554 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACACTTGAGGTAGAGCCCAGT 38495 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| |||||| ||||||||||| ||||| || ||||| Sbjct 38494 GACACCATTGAGAACGTGAAGGCCAAAATCCAGGACAAAGAAGGCATTCCCCCCGACCAG 38435 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| ||||| || | || |||| |||||| || || ||||| Sbjct 38434 CAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGTCGCACACTGTCTGACTACAAC 38375 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTATTATACT 25238 ||||| ||||| ||||| || || || ||||| | || ||||| || |||| ||| ||| Sbjct 38374 ATTCAGAAAGAGTCCACACTGCACTTGGTGCTGCGTCTGAGAGGGGGCAATTGTTAAACT 38315 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||||||| || |||||||| | |||||||| | | Sbjct 39238 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACACTGGAAGTGGAACCCAGT 39179 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| ||||||||||| |||||||| ||||| Sbjct 39178 GACACCATTGAGAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCACCCGACCAG 39119 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| || ||||| |||| |||| ||||| || || ||||| Sbjct 39118 CAGCGTCTGATCTTTGCTGGTAAACAGCTAGAGGATGGCCGCACACTGTCAGACTACAAC 39059 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || |||||||| || || ||| | ||||| | || |||||||| Sbjct 39058 ATCCAGAAAGAATCTACTCTCCATCTGGTGCTGCGTCTGAGAGGAGG 39012 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| || || |||| || || | || ||| | || ||||| | Sbjct 39695 AATGCAGATTTTTGTGAAAACCCTGACTGGCAAGACTATTACACTGGAGGTGGAACCCAG 39636 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| || || | ||| || ||| ||||||||||| |||||||| ||||| Sbjct 39635 TGACACCATTGAAAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCACCCGACCA 39576 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || || || |||||||| | ||||| | ||||| || || ||||| Sbjct 39575 ACAGCGTCTGATCTTCGCTGGCAAACAGCTGGAAGAAGGCCGCACACTGTCAGACTACAA 39516 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| || ||||| ||||| || ||| | ||||| | || ||||| || Sbjct 39515 TATCCAGAAAGAGTCCACTCTTCATCTGGTGCTGCGTCTGAGAGGGGG 39468 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || |||| || || |||||||| | |||||||| | | Sbjct 38782 ATGCAGATTTTTGTCAAAACCCTGACTGGCAAGACCATCACACTGGAAGTGGAACCCAGT 38723 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| |||||||| || || ||||| || ||| Sbjct 38722 GACACCATTGAAAATGTCAAGGCTAAGATCCAGGACAAAGAGGGTATCCCACCCGATCAA 38663 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | ||||||| || || | || || || Sbjct 38662 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACCCTATCAGACTATAAC 38603 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||||||||| || ||| | || || | || ||||| || Sbjct 38602 ATCCAGAAAGAATCCACTCTGCATCTGGTCCTGCGTCTCAGAGGGGG 38556 >seq47 Length=5048387 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||| ||||| || || |||| || | ||||| || | Sbjct 1632898 AATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTTGAACCAAG 1632839 Query 25058 TGACACTATCGAG----TCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 |||||| || ||| ||| |||| || | || ||||||||||| ||||| |||| Sbjct 1632838 TGACACCATTGAGAACGTCA---AAGCCAAGATCCAG-GACAAAGAAGGCATTCCTCCTG 1632783 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | |||||||| | || ||||| ||||| || || ||||||| || || | || | Sbjct 1632782 ATCAACAGCGTCTCATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGAACACTATCTGACT 1632723 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| ||||| ||||||||||| |||| || ||||| Sbjct 1632722 ACAACATTCAGAAAGAATCCACATTACACTTGGTGCT 1632686 Score = 113 bits (124), Expect = 4e-20 Identities = 156/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| || || |||| || | ||||| || | | Sbjct 1632441 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTTGAACCAAGT 1632382 Query 25059 GACACTATCGAG----TCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || ||| ||| |||| || | || ||||||||||| ||||| ||||| Sbjct 1632381 GACACCATTGAGAACGTCA---AAGCCAAGATCCAG-GACAAAGAAGGCATTCCTCCTGA 1632326 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||||| | || ||||| ||||| || || ||||||| || || | || || Sbjct 1632325 TCAACAGCGTCTCATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGAACACTATCTGACTA 1632266 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| ||||| ||||||||||| |||| || ||||| Sbjct 1632265 CAACATTCAGAAAGAATCCACATTACACTTGGTGCT 1632230 Score = 113 bits (124), Expect = 4e-20 Identities = 156/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| || || |||| || | ||||| || | | Sbjct 1632669 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTTGAACCAAGT 1632610 Query 25059 GACACTATCGAG----TCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || ||| ||| |||| || | || ||||||||||| ||||| ||||| Sbjct 1632609 GACACCATTGAGAACGTCA---AAGCCAAGATCCAG-GACAAAGAAGGCATTCCTCCTGA 1632554 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||||| | || ||||| ||||| || || ||||||| || || | || || Sbjct 1632553 TCAACAGCGTCTCATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGAACACTATCTGACTA 1632494 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| ||||| ||||||||||| |||| || ||||| Sbjct 1632493 CAACATTCAGAAAGAATCCACATTACACTTGGTGCT 1632458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433216017753260