Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq47 118 9e-22 seq94 102 7e-17 >seq47 Length=5048387 Score = 118 bits (130), Expect = 9e-22 Identities = 170/238 (71%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 111178 AGTTTAAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACG 111237 ||||| |||||||| || ||||| || || |||| ||||| ||||||||| | ||| Sbjct 1632906 AGTTTCAAAATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTT 1632847 Query 111238 GAACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCC 111297 ||||| || || | ||| | || ||| || || |||||||||||| |||| Sbjct 1632846 GAACCAAGTGACACCATTGAGAACGTCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCT 1632787 Query 111298 GTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGG 111355 |||||||| | || || | ||| ||||| || ||||||||| | || ||||| Sbjct 1632786 CCTGATCAACAGCGTCTCATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGAACACTAT-- 1632729 Query 111356 CCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 | || || || || || |||||||| ||| |||| || ||| |||| || || ||||| Sbjct 1632728 CTGACTACAACATTCAGAAAGAATCCACATTACACTTGGTGCTGCGACTCCGTGGTGG 1632671 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || ||||| || || |||| ||||| ||||||||| | ||| ||||| || Sbjct 1632441 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTTGAACCAAGT 1632382 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || ||| || || |||||||||||| |||| |||||| Sbjct 1632381 GACACCATTGAGAACGTCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGATCAA 1632322 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111364 || | || || | ||| ||||| || ||||||||| | || ||||| | || || | Sbjct 1632321 CAGCGTCTCATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGAACACTAT--CTGACTACA 1632264 Query 111365 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 | || || |||||||| ||| |||| || ||| ||||||| || ||||| Sbjct 1632263 ACATTCAGAAAGAATCCACATTACACTTGGTGCTGCGTCTCCGTGGTGG 1632215 Score = 105 bits (116), Expect = 6e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || ||||| || || |||| ||||| ||||||||| | ||| ||||| || Sbjct 1632669 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTTGAACCAAGT 1632610 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || ||| || || |||||||||||| |||| |||||| Sbjct 1632609 GACACCATTGAGAACGTCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGATCAA 1632550 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111364 || | || || | ||| ||||| || ||||||||| | || ||||| | || || | Sbjct 1632549 CAGCGTCTCATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGAACACTAT--CTGACTACA 1632492 Query 111365 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 | || || |||||||| ||| |||| || ||| |||| || || ||||| Sbjct 1632491 ACATTCAGAAAGAATCCACATTACACTTGGTGCTGCGACTCCGTGGTGG 1632443 >seq94 Length=3237593 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| ||||||||||| || |||| ||||| ||||| || |||| |||||||| Sbjct 39010 ATGCAGATTTTTGTCAAGACCTTGACTGGCAAGACCATCACATTGGAGGTTGAACCCAGT 38951 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || || ||||| ||||| |||||| ||||| ||||| Sbjct 38950 GACACCATTGAAAACGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 38891 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || | || |||| ||| ||||| || | |||||| | || || | || || || Sbjct 38890 CAGCGTCTGATTTTTGCTGGCAAGCAGCTTGAAGATGGTCGCACACTGTCTGACTACAAC 38831 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || || || ||||| ||||| || || |||||||||||| | || |||| Sbjct 38830 ATCCAGAAGGAATCCACACTGCACTTGGTGTTGCGTCTGAGAGGCGGCA 38782 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 111184 AAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111243 |||||||| |||||||| ||||| |||| ||||| || ||||| |||| ||||||| Sbjct 39697 AAAATGCAGATTTTTGTGAAAACCCTGACTGGCAAGACTATTACACTGGAGGTGGAACCC 39638 Query 111244 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111303 || || | ||| | || || || || |||||||||||| |||| ||| Sbjct 39637 AGTGACACCATTGAAAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCACCCGAC 39578 Query 111304 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111363 ||||| | || || | || |||||||| ||||||| || || | || || Sbjct 39577 CAACAGCGTCTGATCTTCGCTGGCAAACAGCTGGAAGAAGGCCGCACACTGTCAGACTAC 39518 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||||| || ||||| || || || ||| | ||| |||||||| | || || Sbjct 39517 AATATCCAGAAAGAGTCCACTCTTCATCTGGTGCTGCGTCTGAGAGGGGG 39468 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || |||||||| || |||||||||| ||||| || ||||| ||||||||| Sbjct 39238 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACACTGGAAGTGGAACCCAGT 39179 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || || || || |||||||||||| |||| ||| || Sbjct 39178 GACACCATTGAGAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCACCCGACCAG 39119 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || | || || | ||| || ||||| | || ||| || || | || || || Sbjct 39118 CAGCGTCTGATCTTTGCTGGTAAACAGCTAGAGGATGGCCGCACACTGTCAGACTACAAC 39059 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || || ||||||||||| || ||| | ||| |||||||| | || |||| Sbjct 39058 ATCCAGAAAGAATCTACTCTCCATCTGGTGCTGCGTCTGAGAGGAGGCA 39010 Score = 89.7 bits (98), Expect = 4e-13 Identities = 163/239 (68%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || ||||| || || |||||||||| ||||| || | || || ||||| Sbjct 38554 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACACTTGAGGTAGAGCCCAGT 38495 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || || ||||| |||||||||||| ||||| ||| || Sbjct 38494 GACACCATTGAGAACGTGAAGGCCAAAATCCAGGACAAAGAAGGCATTCCCCCCGACCAG 38435 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || | || || | ||| ||||| || |||| ||| | || || | || || || Sbjct 38434 CAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGTCGCACACTGTCTGACTACAAC 38375 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCAATAAATAAAC 111425 || || ||||| || ||||| || || ||| |||||||| | || |||||| ||||| Sbjct 38374 ATTCAGAAAGAGTCCACACTGCACTTGGTGCTGCGTCTGAGAGGGGGCAATTGTTAAAC 38316 Score = 89.7 bits (98), Expect = 4e-13 Identities = 153/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| |||||||||||||| |||| ||||| ||||| || ||||| ||||||||| Sbjct 38782 ATGCAGATTTTTGTCAAAACCCTGACTGGCAAGACCATCACACTGGAAGTGGAACCCAGT 38723 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || || || || |||||||| || | || ||||||| Sbjct 38722 GACACCATTGAAAATGTCAAGGCTAAGATCCAGGACAAAGAGGGTATCCCACCCGATCAA 38663 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111364 || | || || | ||| ||||| || |||||||| | | |||| | || |||| Sbjct 38662 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACCCTAT--CAGACTATA 38605 Query 111365 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCT 111404 | || || |||||||| || || ||| | || ||||||| Sbjct 38604 ACATCCAGAAAGAATCCACTCTGCATCTGGTCCTGCGTCT 38565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422930676416800