Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq94 145 6e-30 seq47 136 3e-27 >seq94 Length=3237593 Score = 145 bits (160), Expect = 6e-30 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| ||||| | || || || || |||| || ||||||||| ||| Sbjct 38782 ATGCAGATTTTTGTCAAAACCCTGACTGGCAAGACCATCACACTGGAAGTGGAACCCAGT 38723 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || || ||||| |||||||| |||||||||||| Sbjct 38722 GACACCATTGAAAATGTCAAGGCTAAGATCCAGGACAAAGAGGGTATCCCACCCGATCAA 38663 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||||||||| ||| | || ||| ||| ||| | || || || ||| Sbjct 38662 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACCCTATCAGACTATAAC 38603 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || ||||||||||| | ||| | || |||| Sbjct 38602 ATCCAGAAAGAATCCACTCTGCATCTGGTCCTGCG 38568 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || ||||| || || |||| || ||||||||| ||| Sbjct 39238 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACACTGGAAGTGGAACCCAGT 39179 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || || ||||| || || ||||||||||| || Sbjct 39178 GACACCATTGAGAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCACCCGACCAG 39119 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| || |||||| |||||||| |||||| | || || |||||| Sbjct 39118 CAGCGTCTGATCTTTGCTGGTAAACAGCTAGAGGATGGCCGCACACTGTCAGACTACAAC 39059 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || |||||||| || | ||| | || |||| || | ||||| Sbjct 39058 ATCCAGAAAGAATCTACTCTCCATCTGGTGCTGCGTCTGAGAGGAGG 39012 Score = 131 bits (144), Expect = 1e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || ||||| |||| ||||| || ||| ||| Sbjct 39466 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAAACCATCACACTTGAGGTAGAACCCAGT 39407 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || ||||| || |||||||||||||| ||||| |||||| Sbjct 39406 GACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAGGGTATCCCACCAGATCAA 39347 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| |||| ||| |||||| | || || |||||| Sbjct 39346 CAGCGCCTGATCTTCGCTGGCAAGCAGCTAGAAGATGGCCGCACACTTTCAGACTACAAC 39287 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || ||||| ||||| | ||||| || |||| Sbjct 39286 ATCCAGAAAGAGTCCACTCTCCATTTGGTGCTGCG 39252 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| |||||||| ||||| | || || || || | || || || |||||| || Sbjct 39697 AAAATGCAGATTTTTGTGAAAACCCTGACTGGCAAGACTATTACACTGGAGGTGGAACCC 39638 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | || || |||| || || || ||||| || || ||||||||||| Sbjct 39637 AGTGACACCATTGAAAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCACCCGAC 39578 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||| ||||| || || || ||||||||| | || || |||||| | || || ||| Sbjct 39577 CAACAGCGTCTGATCTTCGCTGGCAAACAGCTGGAAGAAGGCCGCACACTGTCAGACTAC 39518 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || ||||| ||||| | ||| | || |||| || | || ||| Sbjct 39517 AATATCCAGAAAGAGTCCACTCTTCATCTGGTGCTGCGTCTGAGAGGGGGT 39467 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | ||||| || || |||| ||||| || || ||| Sbjct 38554 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACACTTGAGGTAGAGCCCAGT 38495 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || ||||| || ||||| || || ||||| ||||| || Sbjct 38494 GACACCATTGAGAACGTGAAGGCCAAAATCCAGGACAAAGAAGGCATTCCCCCCGACCAG 38435 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| ||||| ||| | |||||| ||||| | || || |||||| Sbjct 38434 CAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGTCGCACACTGTCTGACTACAAC 38375 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 ||||| ||||| ||||| | || || || |||| Sbjct 38374 ATTCAGAAAGAGTCCACACTGCACTTGGTGCTGCG 38340 >seq47 Length=5048387 Score = 136 bits (150), Expect = 3e-27 Identities = 174/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || || || || || | || |||||||| ||| | | Sbjct 1632441 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTTGAACCAAGT 1632382 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | ||||| || || || ||||| || || ||||| || |||||| Sbjct 1632381 GACACCATTGAGAACGTCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGATCAA 1632322 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| ||||| ||||| || ||| ||| || | || || |||||| Sbjct 1632321 CAGCGTCTCATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGAACACTATCTGACTACAAC 1632262 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTTCCATTTTAA 22458 ||||| ||||||||||| |||| || || |||| | || || || ||| ||||||| Sbjct 1632261 ATTCAGAAAGAATCCACATTACACTTGGTGCTGCGTCTCCGTGGTGGATTTTAATTTTAA 1632202 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || || || || || | || |||||||| ||| | | Sbjct 1632669 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTTGAACCAAGT 1632610 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | ||||| || || || ||||| || || ||||| || |||||| Sbjct 1632609 GACACCATTGAGAACGTCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGATCAA 1632550 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| ||||| ||||| || ||| ||| || | || || |||||| Sbjct 1632549 CAGCGTCTCATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGAACACTATCTGACTACAAC 1632490 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| ||||||||||| |||| || || ||||| | || || ||| Sbjct 1632489 ATTCAGAAAGAATCCACATTACACTTGGTGCTGCGACTCCGTGGTGGT 1632442 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || ||||| || || || || || || || | || |||||||| ||| | Sbjct 1632900 AAAATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTTGAACCA 1632841 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | || | ||||| || || || ||||| || || ||||| || ||| Sbjct 1632840 AGTGACACCATTGAGAACGTCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGAT 1632781 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||| ||||| || ||||| ||||| ||||| || ||| ||| || | || || ||| Sbjct 1632780 CAACAGCGTCTCATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGAACACTATCTGACTAC 1632721 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| ||||||||||| |||| || || ||||| | || || ||| Sbjct 1632720 AACATTCAGAAAGAATCCACATTACACTTGGTGCTGCGACTCCGTGGTGGT 1632670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419619532316260