Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1714 96.9 7e-15 seq28 91.5 3e-13 seq9360 89.7 1e-12 seq4666 89.7 1e-12 seq3334 89.7 1e-12 seq2449 89.7 1e-12 seq1853 89.7 1e-12 seq1745 89.7 1e-12 seq571 89.7 1e-12 seq325 89.7 1e-12 seq9 89.7 1e-12 seq12531 87.8 4e-12 seq11942 86.0 1e-11 seq4365 86.0 1e-11 seq1780 86.0 1e-11 >seq1714 Length=12628 Score = 96.9 bits (106), Expect = 7e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 142495 GGTGAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTG 142554 |||| || ||||||| |||||||||||||||||| ||||||||||||| ||||||| Sbjct 7752 GGTGTGAGAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTG 7693 Query 142555 GGTTCGAGCCCCACATCGGGC 142575 |||||||||||||| | |||| Sbjct 7692 GGTTCGAGCCCCACGTTGGGC 7672 >seq28 Length=7535631 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 3806127 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 3806068 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 3806067 CCCCACGTTGGGC 3806055 >seq9360 Length=1581 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 1323 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1264 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 1263 CCCACGTTGGGC 1252 >seq4666 Length=4559 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 1391 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1332 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 1331 CCCACGTTGGGC 1320 >seq3334 Length=6714 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 4866 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 4807 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 4806 CCCACGTTGGGC 4795 >seq2449 Length=9305 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 1079 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1020 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 1019 CCCACGTTGGGC 1008 >seq1853 Length=11736 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 8160 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 8101 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 8100 CCCACGTTGGGC 8089 >seq1745 Length=12376 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 7373 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 7432 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 7433 CCCACGTTGGGC 7444 >seq571 Length=61776 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 59063 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 59004 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 59003 CCCACGTTGGGC 58992 >seq325 Length=287866 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 243644 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 243703 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 243704 CCCACGTTGGGC 243715 >seq9 Length=12614711 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 11667922 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 11667863 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 11667862 CCCACGTTGGGC 11667851 >seq12531 Length=1279 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 977 AGCCCGGCGAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 918 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 917 CCCCACGTTGGGC 905 >seq11942 Length=1316 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 1096 GCCCGACTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1037 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 1036 CCCACGTTGGGC 1025 >seq4365 Length=4925 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||| ||||| |||||||||||||||| Sbjct 2720 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTCAATCTCAGGGTCGTGGGTTCGAGC 2779 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 2780 CCCACGTTGGGC 2791 >seq1780 Length=12171 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| || ||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 8686 GCCCGGCTAACTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 8627 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 8626 CCCACGTTGGGC 8615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027557561152564