Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq47 174 3e-38 seq94 167 4e-36 >seq47 Length=5048387 Score = 174 bits (192), Expect = 3e-38 Identities = 179/234 (76%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 68228 TTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATA 68287 |||| ||| || || || |||| |||||||||| ||||| ||||| || ||||| || Sbjct 1632208 TTAAAATCCACCACGGAGACGCAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTA 1632267 Query 68288 ATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTC 68347 || || ||||| | |||||||| |||||||| || || || ||||| | ||||| || Sbjct 1632268 GTCAGATAGTGTTCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATC 1632327 Query 68348 GGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGA 68407 || ||||||||||| ||||| || ||||| || |||||| ||| |||||||| || Sbjct 1632328 AGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGG 1632387 Query 68408 TTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| ||||| | ||| ||||| || || || | |||||| || || |||||||| Sbjct 1632388 TTCAACTTCAAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1632441 Score = 174 bits (192), Expect = 3e-38 Identities = 177/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||||||||| ||||| ||||| || ||||| || || || Sbjct 1632671 CCACCACGGAGTCGCAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCAGAT 1632730 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | |||||||| |||||||| || || || ||||| | ||||| || || ||| Sbjct 1632731 AGTGTTCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGA 1632790 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||| ||||| || ||||| || |||||| ||| |||||||| || ||| ||| Sbjct 1632791 ATGCCTTCTTTGTCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGTTCAACT 1632850 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || | ||| ||||| || || || | |||||| || || ||||||||| || Sbjct 1632851 TCAAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATTTTG 1632901 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||||||||| ||||| ||||| || ||||| || || || Sbjct 1632443 CCACCACGGAGTCGCAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCAGAT 1632502 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | |||||||| |||||||| || || || ||||| | ||||| || || ||| Sbjct 1632503 AGTGTTCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGA 1632562 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||| ||||| || ||||| || |||||| ||| |||||||| || ||| ||| Sbjct 1632563 ATGCCTTCTTTGTCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGTTCAACT 1632622 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| ||||| || || || | |||||| || || |||||||| Sbjct 1632623 TCAAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1632669 >seq94 Length=3237593 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | || |||| ||||| || || ||||||||||| |||||||| || || || Sbjct 39240 CCTCCTCTGAGACGCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCTGAA 39299 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | |||||||||| |||||| || ||||| || || | ||||| || ||||| Sbjct 39300 AGTGTGCGGCCATCTTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGATCTGGTGGG 39359 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || || || ||||| || ||| |||||||| | |||||| Sbjct 39360 ATACCCTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCTACC 39419 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||||| || || |||||||| || || |||||||| Sbjct 39420 TCAAGTGTGATGGTTTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 39466 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | || |||| |||| || || || || ||||| |||||||| || || || Sbjct 39012 CCTCCTCTCAGACGCAGCACCAGATGGAGAGTAGATTCTTTCTGGATGTTGTAGTCTGAC 39071 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | ||||| |||| ||| || || || || || || | || |||||||||||| Sbjct 39072 AGTGTGCGGCCATCCTCTAGCTGTTTACCAGCAAAGATCAGACGCTGCTGGTCGGGTGGA 39131 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||| ||||| || ||||| |||||||| ||| |||||||| | ||| ||| Sbjct 39132 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTCTCAATGGTGTCACTGGGTTCCACT 39191 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| |||||||| || || || | ||||||||| || |||||||| Sbjct 39192 TCCAGTGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 39238 Score = 159 bits (176), Expect = 6e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || ||||| |||||||| || ||||| || || |||||||| || || || ||||| | Sbjct 38793 AGACGCAACACCAAGTGCAGTGTGGATTCCTTCTGGATGTTGTAGTCAGACAGTGTGCGA 38852 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || || || | || || || || |||||||||||| Sbjct 38853 CCATCTTCAAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGATCTGGGGGAATGCCTTCC 38912 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || || || ||||| ||| || |||||||| | ||| || ||||| ||| Sbjct 38913 TTGTCCTGGATTTTGGCCTTCACGTTTTCAATGGTGTCACTGGGTTCAACCTCCAATGTG 38972 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || | ||||||||| || |||||||| Sbjct 38973 ATGGTCTTGCCAGTCAAGGTCTTGACAAAAATCTGCAT 39010 Score = 158 bits (174), Expect = 2e-33 Identities = 174/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 68230 AATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAAT 68289 |||| || || | || |||| |||||||| || ||||||||||| || ||||| || | Sbjct 38323 AATTGCCCCCTCTCAGACGCAGCACCAAGTGCAGTGTGGACTCTTTCTGAATGTTGTAGT 38382 Query 68290 CGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGG 68349 | || ||||| | ||||| || | |||||| || || || || || | || ||||||| Sbjct 38383 CAGACAGTGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGG 38442 Query 68350 GTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATT 68409 | ||||||||||| ||||| || || || ||||| ||| ||| |||||||| | | Sbjct 38443 GGGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCT 38502 Query 68410 CTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| || | |||||||| || || || |||||||| || || |||||||| Sbjct 38503 CTACCTCAAGTGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 38554 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| |||| || || ||||| ||||| ||||||||||| || || || || | Sbjct 38565 AGACGCAGGACCAGATGCAGAGTGGATTCTTTCTGGATGTTATAGTCTGATAGGGTACGG 38624 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| ||||| || || || | ||||| |||||||| || || || Sbjct 38625 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGTTGATCGGGTGGGATACCCTCT 38684 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| |||||||| || |||||||| | ||| ||||||| ||| Sbjct 38685 TTGTCCTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTGGGTTCCACTTCCAGTGTG 38744 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || ||||| ||||| || |||||||| Sbjct 38745 ATGGTCTTGCCAGTCAGGGTTTTGACAAAAATCTGCAT 38782 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| |||| || || ||||||||||| ||||| || || || || ||||| | Sbjct 39477 AGACGCAGCACCAGATGAAGAGTGGACTCTTTCTGGATATTGTAGTCTGACAGTGTGCGG 39536 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 || ||||| | ||| || || ||||| || || | ||||||||||||||||||||||| Sbjct 39537 CCTTCTTCCAGCTGTTTGCCAGCGAAGATCAGACGCTGTTGGTCGGGTGGAATGCCTTCT 39596 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| |||||||| || |||||||| | ||| || |||| || Sbjct 39597 TTGTCCTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTGGGTTCCACCTCCAGTGTA 39656 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || || || || || ||||| || || || ||||||||| || Sbjct 39657 ATAGTCTTGCCAGTCAGGGTTTTCACAAAAATCTGCATTTTG 39698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921378123982880