Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq47 136 3e-27 seq94 131 1e-25 >seq47 Length=5048387 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| |||| || || || |||| || |||||||| ||||||||||| || Sbjct 1632440 ATACCACCACGGAGTCGCAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCA 1632499 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || |||||| | || || ||||| |||||||||||||||| || ||| Sbjct 1632500 GATAGTGTTCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGA 1632559 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||||||||| ||||| ||| | | |||| |||||| | | ||| Sbjct 1632560 GGAATGCCTTCTTTGTCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGTTCA 1632619 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| |||| || || ||||| |||||||| Sbjct 1632620 ACTTCAAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1632669 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| |||| || || || |||| || |||||||| ||||||||||| || Sbjct 1632668 ATACCACCACGGAGTCGCAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCA 1632727 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || |||||| | || || ||||| |||||||||||||||| || ||| Sbjct 1632728 GATAGTGTTCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGA 1632787 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||||||||| ||||| ||| | | |||| |||||| | | ||| Sbjct 1632788 GGAATGCCTTCTTTGTCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGTTCA 1632847 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| |||| || || ||||| |||||||| Sbjct 1632848 ACTTCAAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1632897 Score = 127 bits (140), Expect = 2e-24 Identities = 168/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 114151 AAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAAT 114210 |||| || ||||| || | || || || |||| || |||||||| ||||||||||| | Sbjct 1632211 AAAT-CCACCACGGAGACGCAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGT 1632269 Query 114211 CGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCG 114270 | | || || |||||| | || || ||||| |||||||||||||||| || | Sbjct 1632270 CAGATAGTGTTCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAG 1632329 Query 114271 GAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATT 114330 ||||||||||||||||||| ||||| ||| | | |||| |||||| | | || Sbjct 1632330 GAGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGTT 1632389 Query 114331 CGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || || | ||| | || ||||| |||| || || ||||| |||||||| Sbjct 1632390 CAACTTCAAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1632441 >seq94 Length=3237593 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || | || || | ||| | || || ||||| || || ||||| || Sbjct 39465 ATACCCCCTCTCAGACGCAGCACCAGATGAAGAGTGGACTCTTTCTGGATATTGTAGTCT 39524 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| || ||||| |||||| |||| |||||||||||||| || Sbjct 39525 GACAGTGTGCGGCCTTCTTCCAGCTGTTTGCCAGCGAAGATCAGACGCTGTTGGTCGGGT 39584 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||||||||| ||||| || | | ||||| |||||| ||| ||| Sbjct 39585 GGAATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTGGGTTCC 39644 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || ||||| ||||| ||||| |||||||||||||| Sbjct 39645 ACCTCCAGTGTAATAGTCTTGCCAGTCAGGGTTTTCACAAAAATCTGCAT 39694 Score = 129 bits (142), Expect = 5e-25 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||||||||| || |||||||| || || || || ||| || || ||||||||| Sbjct 39042 GTAGATTCTTTCTGGATGTTGTAGTCTGACAGTGTGCGGCCATCCTCTAGCTGTTTACCA 39101 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| |||||||| ||||| || ||||||||||||||||| ||||| || Sbjct 39102 GCAAAGATCAGACGCTGCTGGTCGGGTGGAATGCCTTCTTTGTCCTGGATCTTAGCCTTG 39161 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| ||| || |||| || | || |||||||||| || Sbjct 39162 ACATTCTCAATGGTGTCACTGGGTTCCACTTCCAGTGTGATGGTCTTGCCGGTCAAGGTC 39221 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || ||||| ||||||||| || Sbjct 39222 TTGACAAAGATCTGCATGCCT 39242 Score = 116 bits (128), Expect = 3e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || ||||| | || | ||| || || || | || ||||| || || |||||||| || Sbjct 38781 ATGCCGCCTCTCAGACGCAACACCAAGTGCAGTGTGGATTCCTTCTGGATGTTGTAGTCA 38840 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || ||| ||||||||| || || ||||| | || |||||||| || || || Sbjct 38841 GACAGTGTGCGACCATCTTCAAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGATCTGGG 38900 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| || || || | | ||||| |||||| ||| ||| Sbjct 38901 GGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACGTTTTCAATGGTGTCACTGGGTTCA 38960 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || |||| || | || ||||| |||| || || ||||||||||||||| || Sbjct 38961 ACCTCCAATGTGATGGTCTTGCCAGTCAAGGTCTTGACAAAAATCTGCATGCCT 39014 Score = 113 bits (124), Expect = 4e-20 Identities = 166/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || | || || | ||| | || |||||||| || ||||| || || Sbjct 38553 ATACCCCCTCTGAGACGCAGGACCAGATGCAGAGTGGATTCTTTCTGGATGTTATAGTC- 38611 Query 114213 CTCATAG--TACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCG 114270 | |||| |||| |||||| || || || || || |||| ||||||||||| || | Sbjct 38612 -TGATAGGGTACGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGTTGATCGG 38670 Query 114271 GAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATT 114330 | || || || |||||||| ||||| || | | ||||| |||||| ||| || Sbjct 38671 GTGGGATACCCTCTTTGTCCTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTGGGTT 38730 Query 114331 CGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 | || |||| || | || ||||| ||||| ||||| ||||||||||||||| Sbjct 38731 CCACTTCCAGTGTGATGGTCTTGCCAGTCAGGGTTTTGACAAAAATCTGCATG 38783 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| ||||||||||| || || || ||| ||| || || || || ||| Sbjct 38358 GTGGACTCTTTCTGAATGTTGTAGTCAGACAGTGTGCGACCATCCTCCAGCTGCTTGCCA 38417 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| |||||||| ||||| || ||||||||||||||||| || || || Sbjct 38418 GCAAAGATCAGACGCTGCTGGTCGGGGGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTC 38477 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || || | || | || ||||||||||| || Sbjct 38478 ACGTTCTCAATGGTGTCACTGGGCTCTACCTCAAGTGTGATGGTCTTGCCGGTCAGGGTC 38537 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 38538 TTCACAAAGATCTGCAT 38554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420025827292848