Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq797 91.5 3e-13 >seq797 Length=31933 Score = 91.5 bits (100), Expect = 3e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 245011 CATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGA 245070 ||| || || || || ||||||||||| | |||||| |||| | |||||||| || Sbjct 20556 CATAAAAAGATCAGGAATCCAGAGGGCGTAGAAGAGATCCCGTGCTCTCTGCTCCTCTTT 20615 Query 245071 GCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTA 245130 ||||||||||| ||| ||||||||| ||||||| || | ||||| || |||| ||| Sbjct 20616 CCCAGTGTTCTTTTTCAACTCCAAAAAATCAAAGATATCCAGATGCCACGGTTCCAGGTA 20675 Query 245131 GACAGCGA 245138 || |||| Sbjct 20676 GATGGCGA 20683 Score = 87.8 bits (96), Expect = 3e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 244706 ACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTG 244765 ||||| ||| | |||| |||| || ||||| || || ||||||||| |||| ||||| Sbjct 16676 ACCTCATCCTTGCTGGTATACTCCACTATCTCTGTACACAGGTTACTGGACTTAATGGTT 16735 Query 244766 CCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATG 244816 |||| | |||||| |||| ||| |||||||||||| ||||| | |||| Sbjct 16736 CCCAAATTCTGGTGGTTGGTCTTTCTGTTGCAGGCGTCTTTGTACATCATG 16786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944088902895040