Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq94 150 4e-31 seq47 138 3e-27 seq64 87.8 4e-12 >seq94 Length=3237593 Score = 150 bits (166), Expect = 4e-31 Identities = 167/223 (75%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||||| ||| ||||| |||||||| ||||| | || ||||| || ||| Sbjct 39483 AGCACCAGATGAAGAGTGGACTCTTTCTGGATATTGTAGTCTGACAGTGTGCGGCCTTCT 39542 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | ||||| || |||||||||||||||||||| ||| || |||||||| ||| Sbjct 39543 TCCAGCTGTTTGCCAGCGAAGATCAGACGCTGTTGGTCGGGTGGAATGCCTTCTTTGTCC 39602 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||| || || || || ||||| || | || || | ||| || || || || || ||| Sbjct 39603 TGGATCTTAGCCTTGACATTTTCAATGGTGTCACTGGGTTCCACCTCCAGTGTAATAGTC 39662 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTATTCT 288484 || || ||||| || || || || ||||||||| |||| |||| Sbjct 39663 TTGCCAGTCAGGGTTTTCACAAAAATCTGCATTTTGTTTTTCT 39705 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||| | ||| |||||| ||||| |||||||| | || || || || ||| Sbjct 38571 AGGACCAGATGCAGAGTGGATTCTTTCTGGATGTTATAGTCTGATAGGGTACGGCCATCT 38630 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | || || || || |||||||||||||||||| |||||| || ||||| ||| Sbjct 38631 TCCAGCTGCTTGCCGGCAAAGATCAGACGCTGTTGATCGGGTGGGATACCCTCTTTGTCC 38690 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||| || || || || ||||| || | || || | ||| ||||| || ||||| ||| Sbjct 38691 TGGATCTTAGCCTTGACATTTTCAATGGTGTCACTGGGTTCCACTTCCAGTGTGATGGTC 38750 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || ||||| || |||||||| Sbjct 38751 TTGCCAGTCAGGGTTTTGACAAAAATCTGCAT 38782 Score = 138 bits (152), Expect = 3e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | || ||||| || ||||||| || || || |||||| Sbjct 39276 TCTTTCTGGATGTTGTAGTCTGAAAGTGTGCGGCCATCTTCTAGCTGCTTGCCAGCGAAG 39335 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| ||||||||| |||||| || || || ||||||||||| || ||||| || Sbjct 39336 ATCAGGCGCTGTTGATCTGGTGGGATACCCTCCTTGTCCTGGATTTTGGCCTTCACATTC 39395 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | |||||| || || ||||| || || || ||||| ||||| || Sbjct 39396 TCAATGGTGTCACTGGGTTCTACCTCAAGTGTGATGGTTTTGCCAGTCAGGGTCTTCACA 39455 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 39456 AAGATCTGCAT 39466 Score = 134 bits (148), Expect = 3e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| ||||| || ||||| | || ||||| || || |||| ||||| || || || Sbjct 39047 TTCTTTCTGGATGTTGTAGTCTGACAGTGTGCGGCCATCCTCTAGCTGTTTACCAGCAAA 39106 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||||||||||| || ||| || |||||||| |||||||| || || || || || Sbjct 39107 GATCAGACGCTGCTGGTCGGGTGGAATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATT 39166 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || || | ||| ||||| || ||||| ||||| ||||||| |||||||| Sbjct 39167 CTCAATGGTGTCACTGGGTTCCACTTCCAGTGTGATGGTCTTGCCGGTCAAGGTCTTGAC 39226 Query 288462 GAATATCTGCAT 288473 || |||||||| Sbjct 39227 AAAGATCTGCAT 39238 Score = 127 bits (140), Expect = 5e-24 Identities = 146/195 (75%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || ||||| | || ||||| || ||||| | || || || || || Sbjct 38819 TTCCTTCTGGATGTTGTAGTCAGACAGTGTGCGACCATCTTCAAGCTGCTTGCCAGCAAA 38878 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||||||||| || ||||||| || ||||| || ||||||||||| || ||||| Sbjct 38879 AATCAGACGCTGCTG---ATCTGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCAC 38935 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 |||||| || | || || | ||| || || | ||||| ||||| || |||| ||||| Sbjct 38936 GTTTTCAATGGTGTCACTGGGTTCAACCTCCAATGTGATGGTCTTGCCAGTCAAGGTCTT 38995 Query 288459 GACGAATATCTGCAT 288473 ||| || |||||||| Sbjct 38996 GACAAAAATCTGCAT 39010 Score = 125 bits (138), Expect = 2e-23 Identities = 145/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || || || ||||| | || ||||| || || || | || || || || ||| Sbjct 38364 TCTTTCTGAATGTTGTAGTCAGACAGTGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAG 38423 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| || || ||| || |||||||| ||||||||||| || |||||| Sbjct 38424 ATCAGACGCTGCTG---GTCGGGGGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTCACG 38480 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || || | ||||| || || ||||| ||||| |||||||| ||||| Sbjct 38481 TTCTCAATGGTGTCACTGGGCTCTACCTCAAGTGTGATGGTCTTGCCGGTCAGGGTCTTC 38540 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 38541 ACAAAGATCTGCAT 38554 >seq47 Length=5048387 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||||| || || | || | ||| |||||| || || || ||||| | Sbjct 1632671 CCACCACGGAGTCGCAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCAGAT 1632730 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| || || || || || ||||| |||||||||||| | || Sbjct 1632731 AGTGTTCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGA 1632790 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || |||||||| |||||||| || ||||| ||||| || || | || || | ||| ||| Sbjct 1632791 ATGCCTTCTTTGTCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGTTCAACT 1632850 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || || || || ||||| || |||| ||||| || || ||||||||| || Sbjct 1632851 TCAAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATTTTG 1632901 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||||| || || | || | ||| |||||| || || || ||||| | Sbjct 1632443 CCACCACGGAGTCGCAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCAGAT 1632502 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| || || || || || ||||| |||||||||||| | || Sbjct 1632503 AGTGTTCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGA 1632562 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || |||||||| |||||||| || ||||| ||||| || || | || || | ||| ||| Sbjct 1632563 ATGCCTTCTTTGTCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGTTCAACT 1632622 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| || |||| ||||| || || |||||||| Sbjct 1632623 TCAAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1632669 Score = 132 bits (146), Expect = 1e-25 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| ||||| | || || | || | ||| |||||| || || || ||||| | Sbjct 1632214 TCCACCACGGAGACGCAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCAGA 1632273 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || || || ||||| || || || || || ||||| |||||||||||| | || Sbjct 1632274 TAGTGTTCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGG 1632333 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || |||||||| |||||||| || ||||| ||||| || || | || || | ||| || Sbjct 1632334 AATGCCTTCTTTGTCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGTTCAAC 1632393 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| || || || ||||| || |||| ||||| || || |||||||| Sbjct 1632394 TTCAAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1632441 >seq64 Length=4326226 Score = 87.8 bits (96), Expect = 4e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| ||||||||||| || ||||| || |||||||| | ||| || | ||||| ||| Sbjct 3507307 CCTTCCTTATCCTGGATCTTGGCTTTGACATTTTCTATGGTATCACTGGGCTCTACCTCG 3507366 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || ||||| || || || || || || || || || |||||||| ||| Sbjct 3507367 AGTGTGATGGTTTTGCCCGTGAGGGTTTTCACAAAGATCTGCATGATG 3507414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179333915916312