Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq94 140 3e-28 seq47 120 3e-22 >seq94 Length=3237593 Score = 140 bits (154), Expect = 3e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || |||||||| || |||||||| |||| | ||||| | || Sbjct 39027 AGCACCAGATGGAGAGTAGATTCTTTCTGGATGTTGTAGTCTGACAGTGTGCGGCCATCC 39086 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||| || || ||| | || || |||||||||||||| ||||| |||||||| || Sbjct 39087 TCTAGCTGTTTACCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATGCCTTCTTTGTCC 39146 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || |||| || |||||||| | || | |||| Sbjct 39147 TGGATCTTAGCCTTGACATTCTCAATGGTGTCACTGGGTTCCACTTCCAGTGTGATGGTC 39206 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||||||| || || || || || ||||| Sbjct 39207 TTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 39238 Score = 125 bits (138), Expect = 7e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || |||||||| || ||||| || |||| | ||| || | ||| Sbjct 38571 AGGACCAGATGCAGAGTGGATTCTTTCTGGATGTTATAGTCTGATAGGGTACGGCCATCT 38630 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||||||| | || || ||||| || ||||| || || || ||||| || Sbjct 38631 TCCAGCTGCTTGCCGGCAAAGATCAGACGCTGTTGATCGGGTGGGATACCCTCTTTGTCC 38690 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || |||| || |||||||| | || | |||| Sbjct 38691 TGGATCTTAGCCTTGACATTTTCAATGGTGTCACTGGGTTCCACTTCCAGTGTGATGGTC 38750 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| ||||| || ||||| ||||| Sbjct 38751 TTGCCAGTCAGGGTTTTGACAAAAATCTGCAT 38782 Score = 122 bits (134), Expect = 9e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| ||||||||||| || | | ||||| | || || ||||||||||| Sbjct 38358 GTGGACTCTTTCTGAATGTTGTAGTCAGACAGTGTGCGACCATCCTCCAGCTGCTTGCCA 38417 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || || |||||||||||||| ||||| |||||||| || || ||||| ||| Sbjct 38418 GCAAAGATCAGACGCTGCTGGTCGGGGGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTC 38477 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || |||| || || || || | || | |||||||||||||| || Sbjct 38478 ACGTTCTCAATGGTGTCACTGGGCTCTACCTCAAGTGTGATGGTCTTGCCGGTCAGGGTC 38537 Query 64427 TTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 38538 TTCACAAAGATCTGCAT 38554 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || || |||||||| || | | ||||| | ||||||||||||||||| Sbjct 38814 GTGGATTCCTTCTGGATGTTGTAGTCAGACAGTGTGCGACCATCTTCAAGCTGCTTGCCA 38873 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| |||| || |||||||| || || ||||| ||||| || || || ||||| ||| Sbjct 38874 GCAAAAATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTC 38933 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | || |||| || || || || | || | ||||||||| ||||| || Sbjct 38934 ACGTTTTCAATGGTGTCACTGGGTTCAACCTCCAATGTGATGGTCTTGCCAGTCAAGGTC 38993 Query 64427 TTTACGAAAATTTGCAT 64443 || || ||||| ||||| Sbjct 38994 TTGACAAAAATCTGCAT 39010 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | ||| | || || ||||| || |||||||| |||| | ||||| | ||| Sbjct 39255 AGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCTGAAAGTGTGCGGCCATCT 39314 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | || || ||||| || || || || || || || || || Sbjct 39315 TCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGATCTGGTGGGATACCCTCCTTGTCC 39374 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| ||| ||| ||| | || |||| || || || || | || | ||| Sbjct 39375 TGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCTACCTCAAGTGTGATGGTT 39434 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| || || || || || ||||| Sbjct 39435 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 39466 >seq47 Length=5048387 Score = 120 bits (132), Expect = 3e-22 Identities = 172/240 (72%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || ||||| | || | || |||||||| ||||||||||| || | Sbjct 1632670 ACCACCACGGAGTCGCAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCAGA 1632729 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| | ||||||||| ||| | ||||| ||||| || || ||||| Sbjct 1632730 TAGTGTTCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGG 1632789 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 ||| |||||||| || || | | || ||||| || ||| | || |||| | || | Sbjct 1632790 AATGCCTTCTTTGTCCTGGA-TCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGTTCAA 1632848 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTTAATAATGA 64454 |||| | || | ||||||||| ||||| || || || || || |||||||| | | ||| Sbjct 1632849 CTTCAAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATTTTGAAACTGA 1632908 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || ||||| | || | || |||||||| ||||||||||| || | Sbjct 1632442 ACCACCACGGAGTCGCAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCAGA 1632501 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| | ||||||||| ||| | ||||| ||||| || || ||||| Sbjct 1632502 TAGTGTTCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGG 1632561 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 ||| |||||||| || || | | || ||||| || ||| | || |||| | || | Sbjct 1632562 AATGCCTTCTTTGTCCTGGA-TCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGTTCAA 1632620 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| | || | ||||||||| ||||| || || || || || ||||| Sbjct 1632621 CTTCAAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1632669 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || |||||||| ||||||||||| || | | || || | ||||| | ||||||||| Sbjct 1632245 GTGGATTCTTTCTGAATGTTGTAGTCAGATAGTGTTCGGCCATCTTCCAACTGCTTGCCA 1632304 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||| ||||| || || |||||||| |||||||| || || | | || ||||| Sbjct 1632305 GCAAAGATGAGACGCTGTTGATCAGGAGGAATGCCTTCTTTGTCCTGGA-TCTTGGCTTT 1632363 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 || ||| | || |||| | || ||||| | || | ||||||||| ||||| || Sbjct 1632364 GACGTTCTCAATGGTGTCACTTGGTTCAACTTCAAGGGTAATGGTCTTGCCAGTCAAGGT 1632423 Query 64426 TTTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 1632424 CTTCACAAAGATCTGCAT 1632441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499512369145760