Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq3 102 6e-17 >seq3 Length=16461339 Score = 102 bits (112), Expect = 6e-17 Identities = 123/165 (75%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 108475 GATCACAGGGTTCACCACAAGTACTCTGACAC-GACGGCCGACCCACACAACGCCAACAG 108533 || |||||||| || ||||||| ||| || || |||| ||||||| || |||||| | Sbjct 16014611 GACCACAGGGTCCATCACAAGTTCTCCGAGACAGACG-CCGACCCTCATAACGCCTCTCG 16014553 Query 108534 GGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGACGTGATCTC 108593 ||||| | ||||| || ||||||||||||||| | |||| |||| || |||||| Sbjct 16014552 TGGGTTTTTCTTCTCTCATGTGGGATGGCTCATGGTCCGCAAGCACCCAGATGTGATCGA 16014493 Query 108594 GGCCGGTCGAAAAATGGACATGACGGACATATACTCCGATCCGGT 108638 | || |||||| ||||| ||| ||| | | |||||||||| Sbjct 16014492 GAAGGGCCGAAAACTGGACCTGAGGGATCTGAAAGCCGATCCGGT 16014448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381674140841376