Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq94 111 1e-19 >seq94 Length=3237593 Score = 111 bits (122), Expect = 1e-19 Identities = 151/209 (72%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTTCTAAT 15030 |||||| || || ||||| || || ||||| || ||| | | || | ||||| | Sbjct 39491 ATGAAGAGTGGACTCTTTCTGGATATTGTAGTC--TGACAGTGTGCGGCCTTCTTCCAGC 39548 Query 15031 TGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATT 15090 |||||||||||| | |||| ||||||||||||| |||||| ||||| ||||| || Sbjct 39549 TGTTTGCCAGCGAAGATCAGACGCTGTTGGTCGGGTGGAATGCCTTCTTTGTCCTGGATC 39608 Query 15091 TTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCT 15150 || || ||| |||| || || || || ||| || || | ||||| || || || Sbjct 39609 TTAGCCTTGACATTTTCAATGGTGTCACTGGGTTCCACCTCCAGTGTAATAGTCTTGCCA 39668 Query 15151 GTCAGAGTTTTTACAAAAATTTGCATATT 15179 ||||| ||||| |||||||| ||||| || Sbjct 39669 GTCAGGGTTTTCACAAAAATCTGCATTTT 39697 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 |||| |||| || | || || || || || || || || || || |||||||| || Sbjct 38782 TGCCGCCTCTCAGACGCAACACCAAGTGCAGTGTGGATTCCTTCTGGATGTTGTAGTCAG 38841 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 || | | | ||||| | || |||||||| | |||| |||||| || || | Sbjct 38842 ACAGTGTGCGACCATCTTCAAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGATCTGGGG 38901 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| ||||||||||| |||||| || || |||| || || || || ||| | Sbjct 38902 GAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACGTTTTCAATGGTGTCACTGGGTTCAA 38961 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || || || ||||| || || |||| || || |||||||| ||||| Sbjct 38962 CCTCCAATGTGATGGTCTTGCCAGTCAAGGTCTTGACAAAAATCTGCAT 39010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357299641419140