Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq41 105 1e-17 >seq41 Length=5334932 Score = 105 bits (116), Expect = 1e-17 Identities = 189/276 (68%), Gaps = 0/276 (0%) Strand=Plus/Plus Query 8900 CCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCTAAACCT 8959 |||||||||||| || || || ||| | | ||| ||||||||||| || || Sbjct 1837779 CCCTTCACATTGTTGCAGATCAGCTTCTGCAGTGAAAAGGTGTTCACGATGTCAAAGCCG 1837838 Query 8960 ACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATG 9019 || | ||| || || ||||||||||||||||| || |||||||| ||| |||| Sbjct 1837839 ACATTCCCACCAAAAGTGCTGGGTTTCCAGTATTGAGGCGAGCAGATAGGGTTTCCCATT 1837898 Query 9020 AGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCG 9079 | || ||||| || || || || |||| ||||| ||| | || || || ||||| || Sbjct 1837899 AAACCCTTCAAAGAGAAAGGGGCGCCCATCTCGACCATGGTTTCTCCAAAAATGGCTCCA 1837958 Query 9080 GGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAG 9139 || | ||||| || | || | |||| ||| | || | || || | || ||||| Sbjct 1837959 GGTCTTGGTTTCTCTATCATCAGACCAGGGTACAACTCCATTGCATCAATATCTCCATAC 1838018 Query 9140 AGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || | || ||| || || || || ||||||||| Sbjct 1838019 AGTTCCCTCAGCTCAGCTGCCATTTCTTTCTCACCT 1838054 Score = 96.9 bits (106), Expect = 5e-15 Identities = 167/243 (69%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 9726 GATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAG 9785 ||| || || |||| || || | |||||| || |||| || ||||| ||| ||| | Sbjct 1839855 GATGAGTCGGCTGGTCTGGAAGAGCTGCTCATCCTCCCAGTCGGGGTGCTCGACTTTCAA 1839914 Query 9786 AACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGG 9845 | || || || | |||||| || | |||||| || || ||||||||||| | || || Sbjct 1839915 GATGTCACACACTCGGTTGTGCTCCCGCAGCCAGATCGTTGCGTACATCATCAGGCCTGG 1839974 Query 9846 CACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGC 9905 || | |||||| | ||| | ||||| |||||||||| | || ||||| | || | Sbjct 1839975 AACCAGACCAAAGAATTCCTGGCCCACAGCAAAGCGCAAGTGCTCCGGCACATGAGGAGG 1840034 Query 9906 ATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAAC 9965 || ||| | || ||| || || ||| |||| ||||| | || || | ||||| Sbjct 1840035 GTAGGTCATGTCTACGGGGGCTTCCTTTACGATGGGAGGATAAACGTCTCCATTGATAAC 1840094 Query 9966 CTG 9968 ||| Sbjct 1840095 CTG 1840097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723536175893600