Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq94 132 1e-25 seq47 111 4e-19 >seq94 Length=3237593 Score = 132 bits (146), Expect = 1e-25 Identities = 161/219 (74%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || || || ||||| ||||| || |||| |||||||| | || || | || || Sbjct 39482 CAGCACCAGATGAAGAGTGGACTCTTTCTGGATATTGTAGTCTGACAGTGTGCGGCCTTC 39541 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||| || || |||||||| |||||||| ||||| || ||| |||||| || Sbjct 39542 TTCCAGCTGTTTGCCAGCGAAGATCAGACGCTGTTGGTCGGGTGGAATGCCTTCTTTGTC 39601 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| || ||| | |||||| | | ||| || |||| || || || Sbjct 39602 CTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTGGGTTCCACCTCCAGTGTAATAGT 39661 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||| || || || |||||||||||||| || |||||| Sbjct 39662 CTTGCCAGTCAGGGTTTTCACAAAAATCTG---CATTTT 39697 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || | ||| || || ||||| || || | ||||||||||| || || | ||||| Sbjct 38342 CAGCACCAAGTGCAGTGTGGACTCTTTCTGAATGTTGTAGTCAGACAGTGTGCGACCATC 38401 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||||| || || ||||| |||||||||||||| || ||| |||||| || Sbjct 38402 CTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGGGGAATGCCTTCTTTGTC 38461 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| || || ||||||| || | |||||| | | ||||| || | ||||| || Sbjct 38462 CTGGATTTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCTACCTCAAGTGTGATGGT 38521 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || |||||||| || || Sbjct 38522 CTTGCCGGTCAGGGTCTTCACAAAGATCTG 38551 Score = 123 bits (136), Expect = 6e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| || || || ||||| |||| ||||||||||| || || | |||||||| ||||| Sbjct 38807 GTGCAGTGTGGATTCCTTCTGGATGTTGTAGTCAGACAGTGTGCGACCATCTTCAAGCTG 38866 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||| || || || || ||||||||||| || || ||| ||||| ||||| || || Sbjct 38867 CTTGCCAGCAAAAATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATTTT 38926 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||||||| ||| | |||||| | | ||| || ||||| ||||| ||||| || || Sbjct 38927 GGCCTTCACGTTTTCAATGGTGTCACTGGGTTCAACCTCCAATGTGATGGTCTTGCCAGT 38986 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 | || || |||||||| || Sbjct 38987 CAAGGTCTTGACAAAAATCTG 39007 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| || || ||||| || || || |||| ||| ||||| | | || | ||||| Sbjct 38570 CAGGACCAGATGCAGAGTGGATTCTTTCTGGATGTTATAGTCTGATAGGGTACGGCCATC 38629 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| ||||| ||||| |||||||| || || || || || ||| || Sbjct 38630 TTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGTTGATCGGGTGGGATACCCTCTTTGTC 38689 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| || ||| | |||||| | | ||| || |||| ||||| || Sbjct 38690 CTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTGGGTTCCACTTCCAGTGTGATGGT 38749 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || ||||| |||||||| || Sbjct 38750 CTTGCCAGTCAGGGTTTTGACAAAAATCTG 38779 Score = 113 bits (124), Expect = 1e-19 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || || |||||||| || || || |||| ||||||||| | || || | ||||| Sbjct 39026 CAGCACCAGATGGAGAGTAGATTCTTTCTGGATGTTGTAGTCTGACAGTGTGCGGCCATC 39085 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 || ||||| || || || ||||| |||||||||||||| || ||| |||||| || Sbjct 39086 CTCTAGCTGTTTACCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATGCCTTCTTTGTC 39145 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| || || | |||||| | | ||| || |||| ||||| || Sbjct 39146 CTGGATCTTAGCCTTGACATTCTCAATGGTGTCACTGGGTTCCACTTCCAGTGTGATGGT 39205 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || | || || ||||| || || Sbjct 39206 CTTGCCGGTCAAGGTCTTGACAAAGATCTG 39235 >seq47 Length=5048387 Score = 111 bits (122), Expect = 4e-19 Identities = 161/227 (71%), Gaps = 3/227 (1%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || |||| ||| || | ||| | || || || || || | ||||||||||| | || Sbjct 1632677 CGGAGTCGCAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCAGATAGTGTT 1632736 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| |||||| || || |||||||||||||| || || ||| ||| ||| Sbjct 1632737 CGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGAATGCCT 1632796 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||| ||||| || ||| || | |||||| ||| ||| || || | Sbjct 1632797 TCTTTGTCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGTTCAACTTCAAGG 1632856 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || || ||||| || || | || |||||||| || || |||||| Sbjct 1632857 GTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTG---CATTTT 1632900 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || |||| ||| || | ||| | || || || || || | ||||||||||| | || Sbjct 1632449 CGGAGTCGCAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCAGATAGTGTT 1632508 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| |||||| || || |||||||||||||| || || ||| ||| ||| Sbjct 1632509 CGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGAATGCCT 1632568 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||| ||||| || ||| || | |||||| ||| ||| || || | Sbjct 1632569 TCTTTGTCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGTTCAACTTCAAGG 1632628 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || | || |||||||| || || Sbjct 1632629 GTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTG 1632666 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | ||| | || || || || || | ||||||||||| | || Sbjct 1632221 CGGAGACGCAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCAGATAGTGTT 1632280 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| |||||| || || |||||||||||||| || || ||| ||| ||| Sbjct 1632281 CGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGAATGCCT 1632340 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||| ||||| || ||| || | |||||| ||| ||| || || | Sbjct 1632341 TCTTTGTCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGTTCAACTTCAAGG 1632400 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || | || |||||||| || || Sbjct 1632401 GTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTG 1632438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178601315000668