Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq94 140 3e-28 seq47 100 3e-16 >seq94 Length=3237593 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| |||||||| | || || ||| ||| Sbjct 38554 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACACTTGAGGTAGAGCCCAGT 38495 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | ||||||| |||||||| || |||||| ||||||| Sbjct 38494 GACACCATTGAGAACG-TGAAGGCCAAAATCCAGGACAAAGAAGGCATTCCCCCCGACCA 38436 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || ||||| |||||||| || | ||||| || |||||||| Sbjct 38435 GCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGTCGCACACTGTCTGACTACAA 38376 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||| || || || | || ||||| |||||||||||| ||||||| ||| Sbjct 38375 CATTCAGAAAGAGTCCACACTGCACTTGGTGCTGCGTCTGAGAGGGGGC 38327 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || ||||| |||||||| | || || || ||| Sbjct 39010 ATGCAGATTTTTGTCAAGACCTTGACTGGCAAGACCATCACATTGGAGGTTGAACCCAGT 38951 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | ||||| | || | ||||||| ||||| || || |||||| | || || Sbjct 38950 GACACCATTGAAAACG-TGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGATCA 38892 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || |||| || ||||| ||||| || || | ||||| || |||||||| Sbjct 38891 GCAGCGTCTGATTTTTGCTGGCAAGCAGCTTGAAGATGGTCGCACACTGTCTGACTACAA 38832 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| |||||| | || ||||| |||||| ||||| ||||||||||| Sbjct 38831 CATCCAGAAGGAATCCACACTGCACTTGGTGTTGCGTCTGAGAGGCGGC 38783 Score = 136 bits (150), Expect = 4e-27 Identities = 170/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 38238 aaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAG 38297 || |||||||| || || || ||||| || || ||||| || || || | || || || Sbjct 39700 AACAAAATGCAGATTTTTGTGAAAACCCTGACTGGCAAGACTATTACACTGGAGGTGGAA 39641 Query 38298 GCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC 38357 ||| |||| | | ||| | || | || |||| |||||||| || ||||| || Sbjct 39640 CCCAGTGACACCATTGAAAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCACCC 39581 Query 38358 GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 38417 ||||||||||| || || | ||| |||||||||||||| || | ||||| || ||| Sbjct 39580 GACCAACAGCGTCTGATCTTCGCTGGCAAACAGCTGGAAGAAGGCCGCACACTGTCAGAC 39521 Query 38418 TACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| || || | || || ||| ||||||||||| ||||||| || Sbjct 39520 TACAATATCCAGAAAGAGTCCACTCTTCATCTGGTGCTGCGTCTGAGAGGGGG 39468 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| || || ||||| |||||||| | || || || ||| Sbjct 38782 ATGCAGATTTTTGTCAAAACCCTGACTGGCAAGACCATCACACTGGAAGTGGAACCCAGT 38723 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | || |||| ||||||||||| || || |||| ||| Sbjct 38722 GACACCATTGAAAATGTCAAGGCTAAGATCCAGGACAAAGAGGGTATCCCACCCGATCAA 38663 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || ||||| |||||||| || | || ||||| ||||| ||| Sbjct 38662 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACCCTATCAGACTATAAC 38603 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || ||| | || |||||| |||| |||||| | ||||| || Sbjct 38602 ATCCAGAAAGAATCCACTCTGCATCTGGTCCTGCGTCTCAGAGGGGG 38556 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || |||||||||||||| | || || || ||| Sbjct 39466 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAAACCATCACACTTGAGGTAGAACCCAGT 39407 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | ||||||| ||||| ||||| || || | || ||| Sbjct 39406 GACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAGGGTATCCCACCAGATCAA 39347 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| ||||| || || | ||||| || ||||||||| Sbjct 39346 CAGCGCCTGATCTTCGCTGGCAAGCAGCTAGAAGATGGCCGCACACTTTCAGACTACAAC 39287 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || || | || || ||||||||||||||| | ||||| ||| Sbjct 39286 ATCCAGAAAGAGTCCACTCTCCATTTGGTGCTGCGTCTCAGAGGAGGC 39239 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || ||||| |||||||| | || || || ||| Sbjct 39238 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACACTGGAAGTGGAACCCAGT 39179 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| |||||||| || ||||| ||||||| Sbjct 39178 GACACCATTGAGAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCACCCGACCAG 39119 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || || |||||||| || || | ||||| || ||||||||| Sbjct 39118 CAGCGTCTGATCTTTGCTGGTAAACAGCTAGAGGATGGCCGCACACTGTCAGACTACAAC 39059 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || ||| | || || ||| ||||||||||| ||||||| ||| Sbjct 39058 ATCCAGAAAGAATCTACTCTCCATCTGGTGCTGCGTCTGAGAGGAGGC 39011 >seq47 Length=5048387 Score = 100 bits (110), Expect = 3e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 38241 aaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || || || || || | || ||||| ||||| ||| | || || || | Sbjct 1632900 AAAATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTTGAACCA 1632841 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | |||| | |||| || |||| |||||||| || ||||| | || Sbjct 1632840 AGTGACACCATTGAGAACG-TCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGA 1632782 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 |||||||| ||||| | || ||||| ||| |||| || | || || || ||||| Sbjct 1632781 TCAACAGCGTCTCATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGAACACTATCTGACTA 1632722 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| || || ||| | || | || ||||||||||| Sbjct 1632721 CAACATTCAGAAAGAATCCACATTACACTTGGTGCTGCG 1632683 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || ||||| ||||| ||| | || || || | | Sbjct 1632441 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTTGAACCAAGT 1632382 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | |||| || |||| |||||||| || ||||| | || || Sbjct 1632381 GACACCATTGAGAACG-TCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGATCA 1632323 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| ||||| | || ||||| ||| |||| || | || || || |||||||| Sbjct 1632322 ACAGCGTCTCATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGAACACTATCTGACTACAA 1632263 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| || || ||| | || | || |||||||||||| Sbjct 1632262 CATTCAGAAAGAATCCACATTACACTTGGTGCTGCGT 1632226 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || ||||| ||||| ||| | || || || | | Sbjct 1632669 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTTGAACCAAGT 1632610 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | |||| || |||| |||||||| || ||||| | || || Sbjct 1632609 GACACCATTGAGAACG-TCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGATCA 1632551 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| ||||| | || ||||| ||| |||| || | || || || |||||||| Sbjct 1632550 ACAGCGTCTCATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGAACACTATCTGACTACAA 1632491 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||| || || ||| | || | || ||||||||||| Sbjct 1632490 CATTCAGAAAGAATCCACATTACACTTGGTGCTGCG 1632455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500040229199360