Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq44 100 1e-15 seq94 98.7 4e-15 seq5424 91.5 6e-13 seq47 91.5 6e-13 >seq44 Length=5213970 Score = 100 bits (110), Expect = 1e-15 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 451312 AGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAAC 451371 |||||| | || || |||| || || ||||| ||||||||| | || || |||||||| Sbjct 4130426 AGTTACAAACGCTGTTGTTACCGTACCTGCTTACTTCAATGATTCTCAGCGTCAAGCAAC 4130367 Query 451372 TAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGC 451431 ||||||||| ||| ||| |||| | ||||| || || ||||| |||||||| ||||| Sbjct 4130366 TAAAGATGCCGGAACAATTTCTGGCCTCAATGTACTCCGTATTATAAATGAACCAACAGC 4130307 Query 451432 AGCTGCTCTAGCATATGG 451449 || ||| | || || || Sbjct 4130306 TGCAGCTATTGCTTACGG 4130289 Score = 91.5 bits (100), Expect = 6e-13 Identities = 105/140 (75%), Gaps = 1/140 (1%) Strand=Plus/Minus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 |||| || | || || || |||||||||||||| | || ||||| || || || |||| Sbjct 4119430 ATGCTGTTGTCACAGTCCCAGCTTATTTCAATGACTCTCAGCGGCAGGCCACAAAGGATG 4119371 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 | || || ||||| | ||||| ||||| || || |||||||| |||||||||||| Sbjct 4119370 CTGGTACCATCGCTGGCCTTAATGTGCTTCGTATAATCAATGAACCAACAGCAGCTGCTA 4119311 Query 451440 TAGCATATGGACTAGGAAAA 451459 | || ||||| || ||| || Sbjct 4119310 TTGCCTATGG-CTTGGACAA 4119292 Score = 91.5 bits (100), Expect = 6e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 450918 TTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTAG 450977 |||| |||||||| || ||||||| |||||||| || || | |||| ||||||| || | Sbjct 4120184 TTGGTATTGATCTCGGGACCACCTACTCATGTGTGGGGGTCTTCCAACATGGAAAAGTTG 4120125 Query 450978 AAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGATT 451037 ||||||| || |||||||||||| || || ||||| | || || || ||| Sbjct 4120124 AAATTATTGCCAATGACCAAGGAAATCGCACCACTCCAAGCTATGTGGCCTTCACTGATA 4120065 Query 451038 CAGAAAGACT 451047 |||||||||| Sbjct 4120064 CAGAAAGACT 4120055 >seq94 Length=3237593 Score = 98.7 bits (108), Expect = 4e-15 Identities = 156/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || || ||||||| || || || || | || |||||| | | Sbjct 39010 ATGCAGATTTTTGTCAAGACCTTGACTGGCAAGACCATCACATTGGAGGTTGAACCCAGT 38951 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||||| | || ||||| || || |||||||| ||||| || ||||| Sbjct 38950 GACACCATTGAAAACGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 38891 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | ||||| | || || || ||||||||||| | || || | || || || Sbjct 38890 CAGCGTCTGATTTTTGCTGGCAAGCAGCTTGAAGATGGTCGCACACTGTCTGACTACAAC 38831 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 || | ||||| | ||||| ||||| || || | |||||||| Sbjct 38830 ATCCAGAAGGAATCCACACTGCACTTGGTGTTGCGTCTGAGAGG 38787 >seq5424 Length=3803 Score = 91.5 bits (100), Expect = 6e-13 Identities = 153/218 (70%), Gaps = 5/218 (2%) Strand=Plus/Plus Query 451244 CCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATT 451303 ||||| || || || ||||||||||| || || ||||| || | || || ||| | Sbjct 3455 CCTGAGGAGATCTCCTCTATGGTTCTAACCAAGATGAAGGAGATCGCTGAGGCTTATCTG 3514 Query 451304 GGTTCTCCA--GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAAC 451361 || ||||| || || | || || || || || |||||||| ||||| || | || | Sbjct 3515 GG--CTCCAAGGTCACCAACGCTGTCATCACGGTGCCCGCTTACTTCAACGACTCCCAGC 3572 Query 451362 GGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATG 451421 | || || || |||||||| ||| || || || | ||||| || ||||| || || | Sbjct 3573 GCCAGGCCACCAAAGATGCCGGAGTGATAGCAGGGCTCAATGTCCTCCGAATAATCAACG 3632 Query 451422 AACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAA 451459 | || || |||||||| | ||||| || || ||| || Sbjct 3633 AGCCCACGGCAGCTGCCATCGCATACGG-CTTGGACAA 3669 >seq47 Length=5048387 Score = 91.5 bits (100), Expect = 6e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || || || ||||||| || || ||||| ||||| |||||| || Sbjct 1632898 AATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTTGAACCAAG 1632839 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||| | |||||| | ||| || || || || || ||||| |||||||||||||| Sbjct 1632838 TGACACCATTGAGAACGTCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGATCA 1632779 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||| ||| | || || | || || || | |||||||| |||| | | || || || Sbjct 1632778 ACAGCGTCTCATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGAACACTATCTGACTACAA 1632719 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | || || | ||| | ||||| || Sbjct 1632718 CATTCAGAAAGAATCCACATTACACTTGGT 1632689 Score = 89.7 bits (98), Expect = 2e-12 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || ||||||| || || ||||| ||||| |||||| || | Sbjct 1632441 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTTGAACCAAGT 1632382 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | ||| || || || || || ||||| ||||||||||||||| Sbjct 1632381 GACACCATTGAGAACGTCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGATCAA 1632322 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || || | || || || | |||||||| |||| | | || || || Sbjct 1632321 CAGCGTCTCATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGAACACTATCTGACTACAAC 1632262 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | || || | ||| | ||||| || Sbjct 1632261 ATTCAGAAAGAATCCACATTACACTTGGT 1632233 Score = 89.7 bits (98), Expect = 2e-12 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || ||||||| || || ||||| ||||| |||||| || | Sbjct 1632669 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTTGAACCAAGT 1632610 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | ||| || || || || || ||||| ||||||||||||||| Sbjct 1632609 GACACCATTGAGAACGTCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGATCAA 1632550 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || || | || || || | |||||||| |||| | | || || || Sbjct 1632549 CAGCGTCTCATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGAACACTATCTGACTACAAC 1632490 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | || || | ||| | ||||| || Sbjct 1632489 ATTCAGAAAGAATCCACATTACACTTGGT 1632461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975181644234032