Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq3420 190 2e-42 seq44 132 4e-25 >seq3420 Length=6548 Score = 190 bits (210), Expect = 2e-42 Identities = 720/1120 (64%), Gaps = 20/1120 (2%) Strand=Plus/Plus Query 517264 CACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCT 517323 |||||| || || || |||||||| | ||| || |||| ||||| || || || |||| Sbjct 3972 CACATTCAGGATTCCGTTGGCATCGATATCGAAAATGACCTCAATCTGCGGCACTCCTCG 4031 Query 517324 CTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAA 517383 |||| ||| |||| | ||| | ||| | || ||| || |||||||| || | Sbjct 4032 GGGAGCTGGTCGGATATCAGACAAGTCAAACTTGCCAAGAAGGTTGTTATCTTTGGTCAT 4091 Query 517384 TTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGT 517443 | ||| || || || | ||| | ||| || ||| || || | ||||| || Sbjct 4092 CGACCTTTCGCCTTCAAAGACTTGAACGAGAACACTAGCTTGGTTTTCAGTGTAAGTGGT 4151 Query 517444 AAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAAT 517503 || ||| || || | || || || ||||| | | || | | |||||| | Sbjct 4152 GAAAACTTGGGTTTGCCTTGTGGGGATGGTGGTGTTGCGTTTGATCAGAGCGGTCATCAC 4211 Query 517504 ACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTG 517563 ||||| || ||||| | |||||||| ||||||| |||||| | ||| | | || || Sbjct 4212 CCCACCAGCCGTTTCAATCCCAAGAGACAGAGGAGCGACATCCAGTAGCAACAAATCCTG 4271 Query 517564 AAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAAC 517623 | || ||| | | |||| || || ||||| || | ||| || ||||| || || Sbjct 4272 CACGTTCTCAGACTTATCACCAGTTAGGATGGCTGCCTGGACAGCTGCTCCATACGCTAC 4331 Query 517624 AGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAG 517683 |||||||| ||||| | ||| ||| || | ||| ||| || || | | ||| | Sbjct 4332 GGCTTCATCTGGATTGATGCTTTTATTCAGCTCTTTCCCACCAAAGAAGTCTTGAAGCAT 4391 Query 517684 TTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTG 517742 || ||| | || || || | | || ||||| || | ||||| || | | ||| Sbjct 4392 TT-TCTGGATTTTGGGGATCCTGGTGGAGCCTCCCACAAGGACAATGTCCTTAATCTGCA 4450 Query 517743 ATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG---ACCCGCTCTAA 517799 || || | | | ||||| | | |||| ||||||||||| || || | | | Sbjct 4451 GCTTCTCAATTCTGCAATCCCGCAGAGCTTTCTCAACGGGTTCCAGTGTACTC---CGGA 4507 Query 517800 ACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTC 517859 ||| ||| | ||||| || || ||| || || | | | | ||||||| | Sbjct 4508 ACAGGTCACCATTCAGTTCCTCAAACCGAGCCCTGGTGATGGAGGTGTAGAAATCAATCC 4567 Query 517860 CTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAG 517919 |||| |||| || |||| ||||| | | || || ||||| || | | || | Sbjct 4568 CTTCAAACAGGGAGTCAATCTCAATGCTGGCCTGCGTGCTGGAAGACAGGGTCCTCTTGG 4627 Query 517920 CACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTT--TTGCTGATTGATTCAAATCTGT 517977 |||| ||||| || || | | | || | ||| ||| | ||| | | ||| | Sbjct 4628 CACGCTCACAAGCGGTGCGCAAACGCCGCACCGCTCGCTTGTT--TTGTGTGATATCCTT 4685 Query 517978 TTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATTATCAAAATCT 518035 ||| |||| | ||||| || || | | ||| | || || || | ||||||||| Sbjct 4686 CTTAAATTTCCGTTTGAACTCCTCGATGAA--ATGGCTCACCAGGCGGCTGTCAAAATCT 4743 Query 518036 TCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGA 518095 || ||||||| | ||| | || | ||| | | | || | ||| | || || |||| Sbjct 4744 TCCCCTCCCAGGTGAGTGTCCCCAGCCGTGGATTTGACCTCGAAGACCCCTTCCTCAATG 4803 Query 518096 GACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCT 518155 | ||| | || |||||| || ||||| |||| ||||| || || ||||| | || Sbjct 4804 GTCAAGATAGAAACATCAAAAGTCCCACCCCCCAGGTCAAAGATCAGCACATTG--TGCT 4861 Query 518156 TTGTCTTGGT--TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 518213 | || ||| || || || || |||| |||||| |||||||||||||| || | Sbjct 4862 CACCAGTTGTACTTTGGTCCAGGCCGTAAGCAATAGCAGCTGCAGTTGGTTCATTGATGA 4921 Query 518214 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAAT 518273 | |||| ||||| | |||| || || ||||| || ||||||||||| || || Sbjct 4922 TCCTCAGTACATTTAAGCCAGAGATGGCACCAGCATCCTTGGTGGCTTGTCTCTGGCTAT 4981 Query 518274 CGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGC 518333 | ||||| || |||||||| ||||| || |||| | | || | || | |||||| Sbjct 4982 CATTAAAGTAAGCAGGAACCGTAATGACAGCATTATTCACAGTGGTGCCCAAATAAGCCT 5041 Query 518334 TTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAAT 518373 ||| | | |||||| ||| | | | ||| ||||| || Sbjct 5042 CTGCAATCTCTTTCATCTTAGTCAGCACCATGGATGAGAT 5081 >seq44 Length=5213970 Score = 132 bits (146), Expect = 4e-25 Identities = 145/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 518520 CATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCA 518579 || |||||| || |||||||| || ||||| |||| | ||||| ||||| ||||| | Sbjct 4119996 CACCAAAAACTGTGTTGGTTGGGTTCATTGCCACTTGGTTCTTGGCCGCATCACCAATGA 4120055 Query 518580 GATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCG 518639 | |||||| || || || | ||||| |||||| |||||||| ||||| ||||| | Sbjct 4120056 GTCTTTCTGTATCAGTGAAGGCCACATAGCTTGGAGTGGTGCGATTTCCTTGGTCATTGG 4120115 Query 518640 CAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAAT 518699 |||||||||||||||| |||| ||| | || || ||||| | || || || | || Sbjct 4120116 CAATAATTTCAACTTTTCCATGTTGGAAGACCCCCACACATGAGTAGGTGGTCCCGAGAT 4120175 Query 518700 CAATACCAATAGC 518712 ||||||||| ||| Sbjct 4120176 CAATACCAACAGC 4120188 Score = 122 bits (134), Expect = 7e-22 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 518520 CATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCA 518579 || |||| | || ||||||||||| || || | || | ||||| ||||| || || | Sbjct 4132135 CACCAAAGACTGTGTTGGTTGGATTCATCGCCACCTGGTTCTTGGCGGCATCACCGATGA 4132194 Query 518580 GATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCG 518639 | |||||| || ||||| | |||||| |||||| ||||| |||||||| || || | Sbjct 4132195 GCCTTTCTGTATCAGTAAAGGCAACATAGCTTGGAGTGGTGCGGTTACCTTGGTCGTTGG 4132254 Query 518640 CAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAAT 518699 |||||||||||||||| |||| ||| | || || ||||| |||| ||||| | || Sbjct 4132255 CAATAATTTCAACTTTGCCATGTTGGAAGACTCCGACACAGGAGTAAGTGGTTCCAAGAT 4132314 Query 518700 CAATACCAAT 518709 |||| || || Sbjct 4132315 CAATGCCTAT 4132324 Score = 109 bits (120), Expect = 4e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 |||||||| | || || |||| ||| ||||| ||||||||||| ||||| | | ||| Sbjct 4130277 TTTTTATCTAACCCGTAAGCAATAGCTGCAGCTGTTGGTTCATTTATAATACGGAGTACA 4130336 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || |||| |||| |||| ||||||||||| ||||| | || ||||| || || || Sbjct 4130337 TTGAGGCCAGAAATTGTTCCGGCATCTTTAGTTGCTTGACGCTGAGAATCATTGAAGTAA 4130396 Query 518285 GCAGGAACAGTAATAACGGC 518304 ||||| || |||| ||| || Sbjct 4130397 GCAGGTACGGTAACAACAGC 4130416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779770187674024