Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq797 87.8 2e-12 >seq797 Length=31933 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 112887 GGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTG 112946 ||| |||| |||||||| ||||| | ||||||||||||||||| || || || ||| || Sbjct 11097 GGTGTTCGAAACAGTCTCTTGATTTCTCCAATGCCAACAGCCTCTACAGCTCAGATCCTG 11038 Query 112947 GGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCG 113006 ||||| ||||| | | |||| || ||||| | || || || || ||| ||| | Sbjct 11037 GGTAACAATGAGTCCATTGAGCCGTACACCAGCAATATTTACACAAGGAGAGTGCTCTCA 10978 Query 113007 GGAGAGTT 113014 |||||||| Sbjct 10977 GGAGAGTT 10970 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/158 (73%), Gaps = 6/158 (4%) Strand=Plus/Minus Query 112276 TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAG 112335 ||||| | |||||| | |||| || || |||||||| || || || ||| | ||||||| Sbjct 16832 TGTGGTATGCTATTATTGAGTCACAGACAGAGACTGGCACCCCGTACATGATGTACAAAG 16773 Query 112336 ACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAG---AGTTCCAACC 112392 ||||||| ||| ||||| || || |||||||||| || ||| ||| |||| Sbjct 16772 ACGCCTGCAACAGAAAGACCAACCACCAGAATTTGGGAACCATTAAGTCCAGT---AACC 16716 Query 112393 TCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAG 112430 | |||||||| || |||| | ||| ||| |||||| Sbjct 16715 TGTGTACAGAGATAGTGGAGTATACCAGCAAGGATGAG 16678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620577872226880