Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq51 96.9 4e-15 seq797 87.8 2e-12 seq121 84.2 3e-11 >seq51 Length=4861936 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352 ||||||||| | || |||||||| |||||| | ||| ||||| ||||| ||||||| Sbjct 4860281 CCTCATCTCTGCTGATCAGTTCATTAGAGAAGGTCAAGCCAGGCATCAGACCTCGCTTCT 4860340 Query 117353 TCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACG 117412 ||||||| ||||||| |||||| || ||||| ||||| || || ||| ||||| | Sbjct 4860341 TCAACCAGAAAATAGCAGCGAATGATCCAGAGAAAAAGATTCCTTCTACAGCAGCAAAAG 4860400 Query 117413 CAAAAAGGCGCTC 117425 | | || ||||| Sbjct 4860401 CCACAATTCGCTC 4860413 >seq797 Length=31933 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 105908 AACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCA 105967 |||||||| | ||| ||| || || || || | ||||| || |||| | | ||| Sbjct 10970 AACTCTCCTGAGAGCACTCTCCTTGTGTAAATATTGCTGGTGTACGGCTCAATGGACTCA 11029 Query 105968 TTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTA 106027 || ||||||| ||| || || || ||||||||||||||||| | ||||| |||||||| Sbjct 11030 TTGTTACCCAGGATCTGAGCTGTAGAGGCTGTTGGCATTGGAGAAATCAAGAGACTGTTT 11089 Query 106028 CGAAGACC 106035 |||| ||| Sbjct 11090 CGAACACC 11097 >seq121 Length=2118225 Score = 84.2 bits (92), Expect = 3e-11 Identities = 74/90 (82%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 116985 ATAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCAT 117044 ||| || ||||||||||||||||||||||||| ||||| || || |||||| ||||| Sbjct 640551 ATACTCAGCAACTCGCTTCTCAAAGAAGTTGGTTTTCCCTTCCAGAGAAATGTTCTCCAT 640492 Query 117045 AAAGTCAAATGGATTCTTCGCGTTCCAAAT 117074 |||||||| ||||| ||| | ||||||| Sbjct 640491 GAAGTCAAAAGGATT-TTC-TGCTCCAAAT 640464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589824425588960