Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq47 161 2e-34 seq94 158 3e-33 >seq47 Length=5048387 Score = 161 bits (178), Expect = 2e-34 Identities = 171/224 (76%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||||| || || | ||| | ||||| ||||| ||||| ||||| || | || |||| Sbjct 1632679 GAGTCGCAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCAGATAGTGTTCG 1632738 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| | |||||| || || ||||| || || ||||| || |||||||||||||| Sbjct 1632739 GCCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGAATGCCTTC 1632798 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAG 195098 |||||| || || || |||||||||||||||||||| ||| ||| |||||||| Sbjct 1632799 TTTGTCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTC---ACTTGGTTCAACTTCAAG 1632855 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 ||||| ||||| || ||||| || || || || | ||||||| Sbjct 1632856 GGTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATTT 1632899 Score = 158 bits (174), Expect = 3e-33 Identities = 169/222 (76%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||||| || || | ||| | ||||| ||||| ||||| ||||| || | || |||| Sbjct 1632451 GAGTCGCAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCAGATAGTGTTCG 1632510 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| | |||||| || || ||||| || || ||||| || |||||||||||||| Sbjct 1632511 GCCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGAATGCCTTC 1632570 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAG 195098 |||||| || || || |||||||||||||||||||| ||| ||| |||||||| Sbjct 1632571 TTTGTCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTC---ACTTGGTTCAACTTCAAG 1632627 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| ||||| || ||||| || || || || | ||||| Sbjct 1632628 GGTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1632669 Score = 154 bits (170), Expect = 3e-32 Identities = 155/200 (78%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 ||||| ||||| ||||| ||||| || | || |||| |||||||| | |||||| || Sbjct 1632245 GTGGATTCTTTCTGAATGTTGTAGTCAGATAGTGTTCGGCCATCTTCCAACTGCTTGCCA 1632304 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || ||||| || || ||||| || |||||||||||||||||||| || || || ||| Sbjct 1632305 GCAAAGATGAGACGCTGTTGATCAGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTG 1632364 Query 195064 ACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAA 195120 ||||||||||||||||| ||| ||| ||||||||||||| ||||| || ||||| Sbjct 1632365 ACGTTCTCAATGGTGTC---ACTTGGTTCAACTTCAAGGGTAATGGTCTTGCCAGTCAAG 1632421 Query 195121 GTTTTTACGAACACTTGCAT 195140 || || || || | ||||| Sbjct 1632422 GTCTTCACAAAGATCTGCAT 1632441 >seq94 Length=3237593 Score = 158 bits (174), Expect = 3e-33 Identities = 172/227 (76%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || || || ||||||||||||||||| || |||||||| || | || || Sbjct 39473 TCTCAGACGCAGCACCAGATGAAGAGTGGACTCTTTCTGGATATTGTAGTCTGACAGTGT 39532 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || ||||| ||||| || || |||||||| || || |||||||| || |||||||| Sbjct 39533 GCGGCCTTCTTCCAGCTGTTTGCCAGCGAAGATCAGACGCTGTTGGTCGGGTGGAATGCC 39592 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||||||||| || || || |||||| || ||||||||||| ||| |||||| || Sbjct 39593 TTCTTTGTCCTGGATCTTAGCCTTGACATTTTCAATGGTGTC---ACTGGGTTCCACCTC 39649 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || |||| ||||| || |||| ||||| || || | ||||||| Sbjct 39650 CAGTGTAATAGTCTTGCCAGTCAGGGTTTTCACAAAAATCTGCATTT 39696 Score = 136 bits (150), Expect = 9e-27 Identities = 166/225 (74%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || || | ||| || ||||||||||| ||||| ||||| || | || || Sbjct 38333 TCTCAGACGCAGCACCAAGTGCAGTGTGGACTCTTTCTGAATGTTGTAGTCAGACAGTGT 38392 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||| || |||||||| || || ||||| || || || ||||| || |||||||| Sbjct 38393 GCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGGGGAATGCC 38452 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||||||||| || ||||| ||| ||||||||||||||||| ||| || || || Sbjct 38453 TTCTTTGTCCTGGATTTTGGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCTACCTC 38509 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || | ||||| || |||| || || || || | ||||| Sbjct 38510 AAGTGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 38554 Score = 136 bits (150), Expect = 9e-27 Identities = 166/225 (74%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || || || || ||||| || ||||| || || ||||| || | || || Sbjct 39017 TCTCAGACGCAGCACCAGATGGAGAGTAGATTCTTTCTGGATGTTGTAGTCTGACAGTGT 39076 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||| || ||||| ||||| || ||||| || || || ||||| || |||||||| Sbjct 39077 GCGGCCATCCTCTAGCTGTTTACCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATGCC 39136 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||||||||| || || || |||||| |||||||||||||| ||| ||||||||| Sbjct 39137 TTCTTTGTCCTGGATCTTAGCCTTGACATTCTCAATGGTGTC---ACTGGGTTCCACTTC 39193 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| || ||||| || || || || | ||||| Sbjct 39194 CAGTGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 39238 Score = 132 bits (146), Expect = 1e-25 Identities = 165/225 (73%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | || || | || |||||||||||||| || || ||||| || | ||| || Sbjct 39245 TCTGAGACGCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCTGAAAGTGT 39304 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| |||||||| || |||||||| || || ||||| ||||| || || || Sbjct 39305 GCGGCCATCTTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGATCTGGTGGGATACC 39364 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 || ||||| || ||||| ||| || |||||||||||||| ||| ||| || || Sbjct 39365 CTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGTTCTACCTC 39421 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || | || || || |||| || || || || | ||||| Sbjct 39422 AAGTGTGATGGTTTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 39466 Score = 127 bits (140), Expect = 5e-24 Identities = 164/225 (73%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | || || || || |||||||| ||||| || || || || || | || || Sbjct 38561 TCTGAGACGCAGGACCAGATGCAGAGTGGATTCTTTCTGGATGTTATAGTCTGATAGGGT 38620 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| |||||||| || || ||||| || || ||||| || || || || || Sbjct 38621 ACGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGTTGATCGGGTGGGATACC 38680 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 |||||||| || || || |||||| || ||||||||||| ||| ||||||||| Sbjct 38681 CTCTTTGTCCTGGATCTTAGCCTTGACATTTTCAATGGTGTC---ACTGGGTTCCACTTC 38737 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| || |||| ||||| || || | ||||| Sbjct 38738 CAGTGTGATGGTCTTGCCAGTCAGGGTTTTGACAAAAATCTGCAT 38782 Score = 118 bits (130), Expect = 2e-21 Identities = 162/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | ||| || | ||| || ||||| || || || || ||||| || | || || Sbjct 38789 TCTCAGACGCAACACCAAGTGCAGTGTGGATTCCTTCTGGATGTTGTAGTCAGACAGTGT 38848 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| |||||||| || || || || || || || || ||||| |||||||| Sbjct 38849 GCGACCATCTTCAAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGATCTGGGGGAATGCC 38908 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||| ||||| || ||||| ||| ||||| ||||||||||| ||| ||| || || Sbjct 38909 TTCCTTGTCCTGGATTTTGGCCTTCACGTTTTCAATGGTGTC---ACTGGGTTCAACCTC 38965 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || | ||||| || ||||| || || || || | ||||| Sbjct 38966 CAATGTGATGGTCTTGCCAGTCAAGGTCTTGACAAAAATCTGCAT 39010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109180180199468