Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq94 113 3e-20 seq47 113 3e-20 >seq94 Length=3237593 Score = 113 bits (124), Expect = 3e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 34751 ATTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC 34810 ||| || || |||| | || |||||||| | |||| |||||||||||||| ||||| Sbjct 38324 ATTGCCCCCTCTCAGACGCAGCACCAAGTGCAGTGTGGACTCTTTCTGAATGTTGTAGTC 38383 Query 34811 CGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTG 34870 || || | || |||| |||||||| || || ||||| || || || |||||||| | Sbjct 38384 AGACAGTGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGG 38443 Query 34871 CGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTC 34930 || | || || ||||| || || || ||| | || | |||| || ||| Sbjct 38444 GGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTC 38503 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || | || ||||| || || || || ||||||||||||||||||||| Sbjct 38504 TACCTCAAGTGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATA 38555 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| ||||||||||| || ||| | || |||| |||||||| || |||||||| Sbjct 38591 TTCTTTCTGGATGTTATAGTCTGATAGGGTACGGCCATCTTCCAGCTGCTTGCCGGCAAA 38650 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || || || || | || | ||||| ||||| ||||| ||||| Sbjct 38651 GATCAGACGCTGTTGATCGGGTGGGATACCCTCTTTGTCCTGGATCTTAGCCTTGACATT 38710 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | |||| || || || || | || ||||| || || || || || || || Sbjct 38711 TTCAATGGTGTCACTGGGTTCCACTTCCAGTGTGATGGTCTTGCCAGTCAGGGTTTTGAC 38770 Query 34970 AAAGATCTGCAT 34981 ||| |||||||| Sbjct 38771 AAAAATCTGCAT 38782 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| || | | || ||||| || | ||| |||||||| ||||| ||||| ||| Sbjct 39240 CCTCCTCTGAGACGCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCTGAA 39299 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| || ||||| || || || || || || || || || ||| | || Sbjct 39300 AGTGTGCGGCCATCTTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGATCTGGTGGG 39359 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | ||||||||||| || || || || || || || | |||| || || | Sbjct 39360 ATACCCTCCTTGTCCTGGATTTTGGCCTTCAC--ATTCTCAATGGTGTCACTGGGTTCTA 39417 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || | || |||||||| || || || ||||||||||||||||||||| Sbjct 39418 CCTCAAGTGTGATGGTTTTGCCAGTCAGGGTCTTCACAAAGATCTGCATA 39467 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| ||||| ||||| || || | || |||| || |||||||| || ||||| Sbjct 39047 TTCTTTCTGGATGTTGTAGTCTGACAGTGTGCGGCCATCCTCTAGCTGTTTACCAGCAAA 39106 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || |||||||| | || | || || ||||| ||||| ||||| | Sbjct 39107 GATCAGACGCTGCTGGTCGGGTGGAATGCCTTCTTTGTCCTGGATCTTAGCCTTGAC--A 39164 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | |||| || || || || | || ||||| || || || | ||||| Sbjct 39165 TTCTCAATGGTGTCACTGGGTTCCACTTCCAGTGTGATGGTCTTGCCGGTCAAGGTCTTG 39224 Query 34968 ACAAAGATCTGCAT 34981 |||||||||||||| Sbjct 39225 ACAAAGATCTGCAT 39238 >seq47 Length=5048387 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | |||| ||||||||||||||| ||||| || || |||| |||| ||| Sbjct 1632233 ACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCAGATAGTGTTCGGCCATCTTCC 1632292 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| || || ||||| || || || || || || | || | || || ||||| Sbjct 1632293 AACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGAATGCCTTCTTTGTCCTGG 1632352 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||||||| | || | |||| | ||||| || | ||| ||||| || Sbjct 1632353 ATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGTTCAACTTCAAGGGTAATGGTCTTG 1632412 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || | ||||||||||||||||||||| Sbjct 1632413 CCAGTCAAGGTCTTCACAAAGATCTGCATA 1632442 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | |||| ||||||||||||||| ||||| || || |||| |||| ||| Sbjct 1632461 ACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCAGATAGTGTTCGGCCATCTTCC 1632520 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| || || ||||| || || || || || || | || | || || ||||| Sbjct 1632521 AACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGAATGCCTTCTTTGTCCTGG 1632580 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||||||| | || | |||| | ||||| || | ||| ||||| || Sbjct 1632581 ATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGTTCAACTTCAAGGGTAATGGTCTTG 1632640 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || | ||||||||||||||||||||| Sbjct 1632641 CCAGTCAAGGTCTTCACAAAGATCTGCATA 1632670 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | |||| ||||||||||||||| ||||| || || |||| |||| ||| Sbjct 1632689 ACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCAGATAGTGTTCGGCCATCTTCC 1632748 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| || || ||||| || || || || || || | || | || || ||||| Sbjct 1632749 AACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGAATGCCTTCTTTGTCCTGG 1632808 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||||||| | || | |||| | ||||| || | ||| ||||| || Sbjct 1632809 ATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGTTCAACTTCAAGGGTAATGGTCTTG 1632868 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || || | |||||||||||||||||||| || Sbjct 1632869 CCAGTCAAGGTCTTCACAAAGATCTGCATTTT 1632900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324549706967712