Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq51 122 1e-22 seq797 87.8 2e-12 >seq51 Length=4861936 Score = 122 bits (134), Expect = 1e-22 Identities = 103/127 (81%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 18980 GTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttt 19039 || |||| ||||| || |||| ||||||||| || || || ||||||||||| |||| | Sbjct 4860278 GTACCTCATCTCTGCTGATCAGTTCATTAGAGAAGGTCAAGCCAGGCATCAGACCTCGCT 4860337 Query 19040 tttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAA 19099 | || |||||||| |||| ||| ||||||||||| || || || |||||||| || |||| Sbjct 4860338 TCTTCAACCAGAAAATAGCAGCGAATGATCCAGAGAAAAAGATTCCTTCTACAGCAGCAA 4860397 Query 19100 AAGCAAC 19106 |||| || Sbjct 4860398 AAGCCAC 4860404 >seq797 Length=31933 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| |||||||| ||||| || || | ||| || ||||||||| ||| || |||| Sbjct 10465 TCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTAGGTTCTGCAATGTGGATAT 10524 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | || ||||||||||| || | ||||| | |||||||||||| | | |||| Sbjct 10525 TCATCGACTGACTCTGATCGATGTAGGCACCGCGATCAGCTGCCATCTTAATAATAGTTT 10584 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATA 47197 | |||| || ||||| || ||||| || Sbjct 10585 TCTGTGAGATTTCCCAGACAGTTTTGTA 10612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561959813062560