Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3420 136 3e-26 seq44 118 9e-21 seq47 86.0 5e-11 >seq3420 Length=6548 Score = 136 bits (150), Expect = 3e-26 Identities = 313/469 (67%), Gaps = 2/469 (0%) Strand=Plus/Minus Query 552117 GAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATG-TTAAGTTC 552175 || ||||| ||||| || || || || || || || ||||| | ||||| || | | Sbjct 4439 GACATTGTCCTTGTGGGAGGCTCCACCAGGATCCCCAAAATCCAGAAAATGCTTCAAGAC 4380 Query 552176 TTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGG 552235 || ||| ||| ||| | | ||| |||| | ||||||||||| || || || ||||| Sbjct 4379 TTCTTTGG-TGGGAAAGAGCTGAATAAAAGCATCAATCCAGATGAAGCCGTAGCGTATGG 4321 Query 552236 TGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGT 552295 || || | || ||||| || || |||| | | ||| || | || || | | Sbjct 4320 AGCAGCTGTCCAGGCAGCCATCCTAACTGGTGATAAGTCTGAGAACGTGCAGGATTTGTT 4261 Query 552296 ACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAA 552355 || | ||||| ||||||| |||||||| | ||||| | ||| || | ||||| Sbjct 4260 GCTACTGGATGTCGCTCCTCTGTCTCTTGGGATTGAAACGGCTGGTGGGGTGATGACCGC 4201 Query 552356 TCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTC 552415 ||| ||| | | || || || || || | || | | || || | || || | Sbjct 4200 TCTGATCAAACGCAACACCACCATCCCCACAAGGCAAACCCAAGTTTTCACCACTTACAC 4141 Query 552416 AGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGA 552475 || || ||| || |||| ||||| | |||||||| ||||| | || ||||| Sbjct 4140 TGAAAACCAAGCTAGTGTTCTCGTTCAAGTCTTTGAAGGCGAAAGGTCGATGACCAAAGA 4081 Query 552476 TAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACC 552535 ||| || | ||||| | ||| | || | ||| | || ||||| || ||||| || Sbjct 4080 TAACAACCTTCTTGGCAAGTTTGACTTGTCTGATATCCGACCAGCTCCCCGAGGAGTGCC 4021 Query 552536 GCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTG 552584 ||| ||||| || | |||||||||||||||||| ||||| |||||||| Sbjct 4020 GCAGATTGAGGTCATTTTCGATATCGATGCCAACGGAATCCTGAATGTG 3972 >seq44 Length=5213970 Score = 118 bits (130), Expect = 9e-21 Identities = 304/455 (67%), Gaps = 10/455 (2%) Strand=Plus/Minus Query 551789 TGGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGT--ATCATGGTGTGTT 551846 ||| || ||||||||||||| ||||| ||||| | || |||| |||| | || Sbjct 4118986 TGGTGACACTCATCTTGGTGGTGAAGACTTTGACAGCCGAATGGTCAATCAC--TTCATT 4118929 Query 551847 GAAGATTTTAAACGAAAAAACAA--AGTTGATCTATCTACATCTGCCAAAGCTCTTCGTC 551904 || || ||||| ||| | || || || || | ||| | | |||| | || | Sbjct 4118928 ACTGAATTCAAACGCAAATATAAGAAGGACAT-TACCGACAACAAG-AGAGCTGTCCGCC 4118871 Query 551905 GTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTA 551964 |||| | || ||||||||| | || || || | || ||||| |||| ||| | | || Sbjct 4118870 GTCTCCGCACCGCTTGCGAACGTGCAAAGCGTACCCTGTCATCGAGTACGCAAGCAAGTA 4118811 Query 551965 TTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAAT 552024 |||| | ||||| ||| ||||||| |||||| | || | || | ||||| | Sbjct 4118810 TTGAGATCGATTCCCTATATGAGGGAGTTGATTTCTACACCTCAATCACCAGGGCACGTT 4118751 Query 552025 TTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAA 552084 ||||||| | | |||| || || | ||| | || || ||||| || || Sbjct 4118750 TTGAAGAGCTCAATGCTGACCTGTTCCGTGGCACACTAGATCCTGTAGAGAAATCCTTGC 4118691 Query 552085 GAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAA 552144 | ||| | || |||| || | | | || || |||||||| |||||||| || || Sbjct 4118690 GTGATGCCAAACTTGACAAGGCTCAGATCCACGACATTGTGCTCGTTGGTGGTTCCACTC 4118631 Query 552145 GAATTCCTAAAATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAAAATTAAATGAA 552203 | ||||| ||||| | || || | || ||| || |||||| ||| |||| ||| | Sbjct 4118630 GTATTCCCAAAATCCAGAAATTGCTGCAGGACTTCTT-CAATGGCAAAGAATTGAATAAG 4118572 Query 552204 AGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGC 552238 || | ||||| |||||||||||||| |||||||| Sbjct 4118571 AGCATCAATCCTGATGAGGCTGTTGCATATGGTGC 4118537 Score = 111 bits (122), Expect = 1e-18 Identities = 304/457 (67%), Gaps = 14/457 (3%) Strand=Plus/Minus Query 551789 TGGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGT--ATCATGGTGTGTT 551846 ||| || ||||||||||||| ||||| ||||| | | || |||| | || | || Sbjct 4130062 TGGTGACACTCATCTTGGTGGTGAAGACTTTGACAGTCGAATGGTCAACCAC--TTCATT 4130005 Query 551847 GAAGATTTTAAACGAAAA---AACAAAGTTGATCTATCTACATCTGCCAAAGCTCTTCGT 551903 | || || ||||| ||| || |||| || | || || | | |||| | || Sbjct 4130004 GCTGAATTCAAACGCAAATATAAGAAAGATGTTAGCGATA-ATAAG--AGAGCTGTCCGC 4129948 Query 551904 CGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACT 551963 ||||| | || ||||| ||| | || || || | || ||||| |||| ||| | | | Sbjct 4129947 CGTCTCCGCACCGCTTGTGAACGTGCAAAGCGTACCCTGTCATCGAGTACGCAAGCAAGT 4129888 Query 551964 ATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAA 552023 ||||| | ||||| | | ||||||| |||||| | || | || | ||||| Sbjct 4129887 ATTGAGATCGATTCCCTTTATGAGGGAGTTGATTTCTACACCTCAATCACCAGGGCACGT 4129828 Query 552024 TTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTA 552083 |||||||| | | |||| || || | ||| | || || ||||| || || Sbjct 4129827 TTTGAAGAGCTCAATGCTGACCTGTTCCGTGGCACACTAGATCCTGTAGAGAAATCCTTG 4129768 Query 552084 AGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACA 552143 | ||| | || |||| || | | | || || |||||||| |||||||| || || Sbjct 4129767 CGTGATGCCAAACTTGACAAGGCTCAGATCCACGACATTGTGCTCGTTGGTGGTTCCACT 4129708 Query 552144 AGAATTCCTAAAATTCGCGAAATG--TTAAGTTCTTATTTCAATGGTAAAAAATTAAATG 552201 | ||||| ||||| | ||||| | || ||| || |||||| ||| |||| ||| Sbjct 4129707 CGTATTCCCAAAATCCA-GAAATTACTGCAGGACTTCTT-CAATGGCAAAGAATTGAATA 4129650 Query 552202 AAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGC 552238 | || | ||||| |||||||||||||| |||||||| Sbjct 4129649 AGAGCATCAATCCTGATGAGGCTGTTGCATATGGTGC 4129613 Score = 105 bits (116), Expect = 5e-17 Identities = 105/135 (78%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | || || ||||| ||||| |||||||| || || || || || || |||| Sbjct 4119430 ATGCTGTTGTCACAGTCCCAGCTTATTTCAATGACTCTCAGCGGCAGGCCACAAAGGATG 4119371 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| || ||||| |||||||| |||||||| ||||||||||| || || ||||| Sbjct 4119370 CTGGTACCATCGCTGGCCTTAATGTGCTTCGTATAATCAATGAACCAACAGCAGCTGCTA 4119311 Query 550518 TTGCATATGGACTTG 550532 |||| ||||| |||| Sbjct 4119310 TTGCCTATGG-CTTG 4119297 Score = 105 bits (116), Expect = 5e-17 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 550390 AGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTAC 550449 |||||| | || || | || ||||| || || || ||||| || || |||||||| || Sbjct 4130426 AGTTACAAACGCTGTTGTTACCGTACCTGCTTACTTCAATGATTCTCAGCGTCAAGCAAC 4130367 Query 550450 TAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGC 550509 ||||||||| ||| ||| |||| || ||||| || |||||||| |||||||| || || Sbjct 4130366 TAAAGATGCCGGAACAATTTCTGGCCTCAATGTACTCCGTATTATAAATGAACCAACAGC 4130307 Query 550510 TGCTGCACTTGCATATGGACTTGATAAA 550537 ||| || |||| || || | |||||| Sbjct 4130306 TGCAGCTATTGCTTACGGGTTAGATAAA 4130279 Score = 96.9 bits (106), Expect = 3e-14 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||| | ||||| ||| | || ||||| || ||||| || || | ||| |||| || Sbjct 4120189 AGCTGTTGGTATTGATCTCGGGACCACCTACTCATGTGTGGGGGTCTTCCAACATGGAAA 4120130 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 ||||||||||||||||||||| ||||| || | || |||||| ||||| | ||||| Sbjct 4120129 AGTTGAAATTATTGCCAATGACCAAGGAAATCGCACCACTCCAAGCTATGTGGCCTTCAC 4120070 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAA--GCCACTGGTAATCCTACC 550168 || || ||| | |||||||||| || || | ||| | || || || || ||| Sbjct 4120069 TGATACAGAAAGACTCATTGGTGATGCGGCCAAGAACCAAGTGGCAATG--AACCCAACC 4120012 Query 550169 AATACTATTTTTGATG 550184 || || |||||| || Sbjct 4120011 AACACAGTTTTTGGTG 4119996 Score = 93.3 bits (102), Expect = 3e-13 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 ||||| || ||| | |||||||| || ||||| || || | ||| |||| |||||| Sbjct 4132324 ATAGGCATTGATCTTGGAACCACTTACTCCTGTGTCGGAGTCTTCCAACATGGCAAAGTT 4132265 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 |||||||||||||| || ||||||||| | || |||||| |||||| | || || || Sbjct 4132264 GAAATTATTGCCAACGACCAAGGTAACCGCACCACTCCAAGCTATGTTGCCTTTACTGAT 4132205 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAA 550143 || ||| | | |||||||| || || Sbjct 4132204 ACAGAAAGGCTCATCGGTGATGCCGCCAA 4132176 >seq47 Length=5048387 Score = 86.0 bits (94), Expect = 5e-11 Identities = 138/195 (71%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 563283 TTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAA 563342 |||||| ||| ||||| |||| ||| |||| |||||| | || || || ||||| Sbjct 1632250 TTCTTTCTGAATGTTGTAGTCAGATAGTGTTCGGCCATCTTCCAACTGCTTGCCAGCAAA 1632309 Query 563343 AATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGC 563402 || || | || |||||||||||||| |||||||| || || || || ||| || Sbjct 1632310 GATGAGACGCTGTTGATCAGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTGACGTT 1632369 Query 563403 CTCAATTGTATCAGTGTGAGTACA--TTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTA 563460 |||||| || ||| | || || || ||| || |||| || || ||||| | || || Sbjct 1632370 CTCAATGGTGTCACT-TG-GTTCAACTTCAAGGGTAATGGTCTTGCCAGTCAAGGTCTTC 1632427 Query 563461 ACGAAAATTTGCATA 563475 || || || |||||| Sbjct 1632428 ACAAAGATCTGCATA 1632442 Score = 86.0 bits (94), Expect = 5e-11 Identities = 138/195 (71%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 563283 TTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAA 563342 |||||| ||| ||||| |||| ||| |||| |||||| | || || || ||||| Sbjct 1632478 TTCTTTCTGAATGTTGTAGTCAGATAGTGTTCGGCCATCTTCCAACTGCTTGCCAGCAAA 1632537 Query 563343 AATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGC 563402 || || | || |||||||||||||| |||||||| || || || || ||| || Sbjct 1632538 GATGAGACGCTGTTGATCAGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTGACGTT 1632597 Query 563403 CTCAATTGTATCAGTGTGAGTACA--TTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTA 563460 |||||| || ||| | || || || ||| || |||| || || ||||| | || || Sbjct 1632598 CTCAATGGTGTCACT-TG-GTTCAACTTCAAGGGTAATGGTCTTGCCAGTCAAGGTCTTC 1632655 Query 563461 ACGAAAATTTGCATA 563475 || || || |||||| Sbjct 1632656 ACAAAGATCTGCATA 1632670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028174636849960