Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq94 141 7e-29 seq47 125 6e-24 >seq94 Length=3237593 Score = 141 bits (156), Expect = 7e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | ||| | || | ||| || ||||||||||| || || ||||| || | Sbjct 39012 CCTCCTCTCAGACGCAGCACCAGATGGAGAGTAGATTCTTTCTGGATGTTGTAGTCTGAC 39071 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| || | || ||||| ||||| |||| |||||| || ||||| ||| Sbjct 39072 AGTGTGCGGCCATCCTCTAGCTGTTTACCAGCAAAGATCAGACGCTGCTGGTCGGGTGGA 39131 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||| || || || || || ||| | || | |||||| | ||||||| Sbjct 39132 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTCTCAATGGTGTCACTGGGTTCCACT 39191 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || |||| || |||||||| || || || ||||| ||||||||| Sbjct 39192 TCCAGTGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCATG 39239 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | ||| | || | ||| || || |||||||| || || || || || | Sbjct 38556 CCCCCTCTGAGACGCAGGACCAGATGCAGAGTGGATTCTTTCTGGATGTTATAGTCTGAT 38615 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| |||| ||||| || ||||| |||| ||||||||||||||| || Sbjct 38616 AGGGTACGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGTTGATCGGGTGGG 38675 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || ||||| || || || || || ||| |||| | |||||| | ||||||| Sbjct 38676 ATACCCTCTTTGTCCTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTGGGTTCCACT 38735 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || |||| || ||||| || | ||||| ||||| ||||||||| Sbjct 38736 TCCAGTGTGATGGTCTTGCCAGTCAGGGTTTTGACAAAAATCTGCATG 38783 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | ||| | || | |||||| || || ||||| || |||||||| || | Sbjct 39468 CCCCCTCTCAGACGCAGCACCAGATGAAGAGTGGACTCTTTCTGGATATTGTAGTCTGAC 39527 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | | || |||| || || || || || |||| ||||||||| ||||| ||| Sbjct 39528 AGTGTGCGGCCTTCTTCCAGCTGTTTGCCAGCGAAGATCAGACGCTGTTGGTCGGGTGGA 39587 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||| || || || || || ||| |||| | |||||| | |||||| Sbjct 39588 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTGGGTTCCACC 39647 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || | || ||||| || | ||||| ||||| |||||||| Sbjct 39648 TCCAGTGTAATAGTCTTGCCAGTCAGGGTTTTCACAAAAATCTGCAT 39694 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 101239 ATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATC 101298 ||| || ||||| | ||| | || || || || || || ||||| || || ||||| || Sbjct 38324 ATTGCCCCCTCTCAGACGCAGCACCAAGTGCAGTGTGGACTCTTTCTGAATGTTGTAGTC 38383 Query 101299 GGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGG 101358 | | || | |||| |||| ||||| || ||||| |||| |||||| || ||||| Sbjct 38384 AGACAGTGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGG 38443 Query 101359 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTC 101418 |||||||||||||| || || ||||| || || | || | |||||| | || Sbjct 38444 GGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTC 38503 Query 101419 CACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| |||| || |||||||| | || || ||||| |||||||| Sbjct 38504 TACCTCAAGTGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 38554 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | ||| || || || || || || ||||| || || || ||||| || | Sbjct 38784 CCGCCTCTCAGACGCAACACCAAGTGCAGTGTGGATTCCTTCTGGATGTTGTAGTCAGAC 38843 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || | ||||| || ||||| |||| |||||| ||||| || ||| Sbjct 38844 AGTGTGCGACCATCTTCAAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGATCTGGGGGA 38903 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| || || || ||||| || || |||| | |||||| | ||| || Sbjct 38904 ATGCCTTCCTTGTCCTGGATTTTGGCCTTCACGTTTTCAATGGTGTCACTGGGTTCAACC 38963 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || | |||| || ||||| || || || || ||||| ||||||||| Sbjct 38964 TCCAATGTGATGGTCTTGCCAGTCAAGGTCTTGACAAAAATCTGCATG 39011 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | ||| | || ||||| || || || ||||| || || ||||| || | Sbjct 39240 CCTCCTCTGAGACGCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCTGAA 39299 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| || | ||||| || || || |||| ||||||||||| || || Sbjct 39300 AGTGTGCGGCCATCTTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGATCTGGTGGG 39359 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || || || || ||||| || ||| | || | |||||| | ||| || Sbjct 39360 ATACCCTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCTACC 39419 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| |||| |||||||| || | || || ||||| |||||||| Sbjct 39420 TCAAGTGTGATGGTTTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 39466 >seq47 Length=5048387 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 || |||||||| || || ||||| || | | |||| | |||| ||||| ||||| || Sbjct 1632245 GTGGATTCTTTCTGAATGTTGTAGTCAGATAGTGTTCGGCCATCTTCCAACTGCTTGCCA 1632304 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 ||||| || | |||||||||||| || |||||||||||||| || || || || ||| Sbjct 1632305 GCAAAGATGAGACGCTGTTGATCAGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTG 1632364 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452 || | || | |||||| | ||| |||||||| || | || ||||| || || || Sbjct 1632365 ACGTTCTCAATGGTGTCACTTGGTTCAACTTCAAGGGTAATGGTCTTGCCAGTCAAGGTC 1632424 Query 101453 TTTACAAATATCTGCAT 101469 || ||||| |||||||| Sbjct 1632425 TTCACAAAGATCTGCAT 1632441 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 || |||||||| || || ||||| || | | |||| | |||| ||||| ||||| || Sbjct 1632473 GTGGATTCTTTCTGAATGTTGTAGTCAGATAGTGTTCGGCCATCTTCCAACTGCTTGCCA 1632532 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 ||||| || | |||||||||||| || |||||||||||||| || || || || ||| Sbjct 1632533 GCAAAGATGAGACGCTGTTGATCAGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTG 1632592 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452 || | || | |||||| | ||| |||||||| || | || ||||| || || || Sbjct 1632593 ACGTTCTCAATGGTGTCACTTGGTTCAACTTCAAGGGTAATGGTCTTGCCAGTCAAGGTC 1632652 Query 101453 TTTACAAATATCTGCAT 101469 || ||||| |||||||| Sbjct 1632653 TTCACAAAGATCTGCAT 1632669 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 || |||||||| || || ||||| || | | |||| | |||| ||||| ||||| || Sbjct 1632701 GTGGATTCTTTCTGAATGTTGTAGTCAGATAGTGTTCGGCCATCTTCCAACTGCTTGCCA 1632760 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 ||||| || | |||||||||||| || |||||||||||||| || || || || ||| Sbjct 1632761 GCAAAGATGAGACGCTGTTGATCAGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTG 1632820 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452 || | || | |||||| | ||| |||||||| || | || ||||| || || || Sbjct 1632821 ACGTTCTCAATGGTGTCACTTGGTTCAACTTCAAGGGTAATGGTCTTGCCAGTCAAGGTC 1632880 Query 101453 TTTACAAATATCTGCAT 101469 || ||||| |||||||| Sbjct 1632881 TTCACAAAGATCTGCAT 1632897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396175992249828