Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq47 104 2e-17 seq94 100 2e-16 >seq47 Length=5048387 Score = 104 bits (114), Expect = 2e-17 Identities = 157/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||||| |||| ||| ||||| ||||| ||||| |||||||| |||| Sbjct 1632224 AGACGCAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCAGATAGTGTTCGG 1632283 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| || ||||| || || ||||||||||| | |||| ||| || Sbjct 1632284 CCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGAATGCCTTCT 1632343 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGAC--GCCTCCACCTCCACCG 48726 ||||| ||||| ||| || | | || | | | || | || || || | | Sbjct 1632344 TTGTCCTGGATCTTGGCTTTGAC-GTTCTCA-ATGGTGTCACTTGGTTCAACTTCAAGGG 1632401 Query 48727 TAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || ||||| || || ||||| |||||||| Sbjct 1632402 TAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1632441 Score = 104 bits (114), Expect = 2e-17 Identities = 157/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||||| |||| ||| ||||| ||||| ||||| |||||||| |||| Sbjct 1632452 AGTCGCAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCAGATAGTGTTCGG 1632511 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| || ||||| || || ||||||||||| | |||| ||| || Sbjct 1632512 CCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGAATGCCTTCT 1632571 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGAC--GCCTCCACCTCCACCG 48726 ||||| ||||| ||| || | | || | | | || | || || || | | Sbjct 1632572 TTGTCCTGGATCTTGGCTTTGAC-GTTCTCA-ATGGTGTCACTTGGTTCAACTTCAAGGG 1632629 Query 48727 TAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || ||||| || || ||||| |||||||| Sbjct 1632630 TAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1632669 Score = 104 bits (114), Expect = 2e-17 Identities = 157/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||||| |||| ||| ||||| ||||| ||||| |||||||| |||| Sbjct 1632680 AGTCGCAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCAGATAGTGTTCGG 1632739 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| || ||||| || || ||||||||||| | |||| ||| || Sbjct 1632740 CCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGAATGCCTTCT 1632799 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGAC--GCCTCCACCTCCACCG 48726 ||||| ||||| ||| || | | || | | | || | || || || | | Sbjct 1632800 TTGTCCTGGATCTTGGCTTTGAC-GTTCTCA-ATGGTGTCACTTGGTTCAACTTCAAGGG 1632857 Query 48727 TAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || ||||| || || ||||| |||||||| Sbjct 1632858 TAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1632897 >seq94 Length=3237593 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| || || ||||||||||| || || ||| || || || || ||||| ||||| Sbjct 38783 GCCGCCTCTCAGACGCAACACCAAGTGCAGTGTGGATTCCTTCTGGATGTTGTAGTCAGA 38842 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | ||| | || || | |||||| || ||||| ||||| ||||| ||||| | ||| Sbjct 38843 CAGTGTGCGACCATCTTCAAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGATCTGGGGG 38902 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || ||| |||||||| || || || || | | | || | || || Sbjct 38903 AATGCCTTCCTTGTCCTGGATTTTGGCCTTCACGTTTTCAATGGTGTCACTGGGTTCAAC 38962 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || || || ||||| || || |||||||||||||| Sbjct 38963 CTCCAATGTGATGGTCTTGCCAGTCAAGGTCTTGACAAAAATCTGCAT 39010 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || || || |||| ||||||||| || ||| |||||| || || ||||| || || Sbjct 39239 GCCTCCTCTGAGACGCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCTGA 39298 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || || | |||||| || || || ||||| ||||||||||| | || Sbjct 39299 AAGTGTGCGGCCATCTTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGATCTGGTGG 39358 Query 48659 AACGCCCTCCTTGTC 48673 | ||||||||||| Sbjct 39359 GATACCCTCCTTGTC 39373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380839156676892