Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq180 141 2e-28 seq112 134 3e-26 seq797 89.7 1e-12 >seq180 Length=1072290 Score = 141 bits (156), Expect = 2e-28 Identities = 174/238 (73%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 241390 CTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCG 241449 ||||||||| || ||||| ||| ||||| |||||||||||||| ||||| |||| Sbjct 993062 CTGACAGCCACTGCTGATGTGGGACATGACCTTCTGTTTGAGTTGGGTGACCTGCTCCCT 993121 Query 241450 CAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTC 241509 ||| || || || || ||| | || ||| || |||||||| |||||| || || Sbjct 993122 CAGCACCGAGGCCGTGGTGGCTAAGCCGCTGTTCTCCGACTTGAGGCTCTTCACCTTGTC 993181 Query 241510 CTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTT 241569 |||||| || | |||||| ||||| || | | | ||| |||| || |||| ||||| Sbjct 993182 CTCCAGTCGGGAGATGCGCTCCAGCTTCCTCTTCCTGCACTTGGACGCCGCCACCCGGTT 993241 Query 241570 CCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 || || | ||| | || ||||||||||| || ||| |||||||||||| || ||| Sbjct 993242 CCTCAGGCGCTTCCTCTCGGCCTTGATGCGCTCTTGGCTCTCCATGTCGATGGGGGAC 993299 >seq112 Length=2488106 Score = 134 bits (148), Expect = 3e-26 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 241414 CAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAG 241473 || ||||| ||| |||||||||||||| || |||||||| | | ||||| |||||| Sbjct 2107060 CATGACCTTCTGCTTGAGTTGGGCCACTTGCTCCCGCAGGAGGTTGGCGGTGGAGGACAG 2107001 Query 241474 TCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAG 241533 | | ||| | |||||||| ||| || || |||||||| | |||||||| ||||| Sbjct 2107000 CTCCGAGTTCTGCGACTTGAGGCTCTTGACCTTGTCCTCCAGTCTGGCGATGCGCTCCAG 2106941 Query 241534 TTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTT 241593 || | | | ||| |||| ||| || | |||||||| | | ||| | |||||||| Sbjct 2106940 CTTCCTCTTCCTGCACTTGGAGGCGGCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTT 2106881 Query 241594 GATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 |||||| ||||| |||||||||||| || ||| Sbjct 2106880 GATGCGCTCCTGCGACTCCATGTCGATGGGCGAC 2106847 >seq797 Length=31933 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 212915 TATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGAT 212974 || |||||| || ||||||||||| ||||| ||||| || ||||| ||||| || Sbjct 10963 TACCTGGAACTCTCCTGAGAGCACTCTCCTTGTGTAAATATTGCTGGTGTACGGCTCAAT 11022 Query 212975 GCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAG 213034 | ||| ||||| ||||| ||||| || || |||||| ||||| |||| | || ||| Sbjct 11023 GGACTCATTGTTACCCAGGATCTGAGCTGTAGAGGCTGTTGGCATTGGAGAAATCAAGAG 11082 Query 213035 ACTGTTCCTCACTCCGT 213051 |||||| | || |||| Sbjct 11083 ACTGTTTCGAACACCGT 11099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931285897231360