Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq5 132 6e-26 seq199 114 1e-20 seq132 113 5e-20 >seq5 Length=15003573 Score = 132 bits (146), Expect = 6e-26 Identities = 279/413 (68%), Gaps = 10/413 (2%) Strand=Plus/Plus Query 160619 GACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTT 160678 |||||||||| ||| || |||| || || || | |||||||| || | | |||||| Sbjct 11235410 GACGATCTCTGCGTTGGTTTTGATTGGGAAATCCATGCCGCACAAATTCAGGAGGTACTT 11235469 Query 160679 CCATTTCGCGCTCAGGTCGTG--CAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGG 160736 ||||| || || || || ||| || ||| || || | ||| ||||| || || Sbjct 11235470 CCATT--GCACTTGACTCTTGAGCAGATCTTCCATACAGTTCAGATCCGCCTGGACCCGA 11235527 Query 160737 CTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACAC 160796 ||| |||||||| || || | |||| ||| | || || || || ||| |||||||| Sbjct 11235528 GACCACGAAGCGTAGACGACATCTTCTAATTTGCGGGTCAGGAAAACATTAGCGAAACAC 11235587 Query 160797 GACACGATTCCCACCACCGCCAGAAAGAACATCTTATCC---GCCTTTCGGTCCACGTGC 160853 || ||| | || ||||||||||| ||| || | || | |||||||| Sbjct 11235588 GAAGCGACGGCTCGGACGGCCAGAAAGAA---CTTTCCCGAGGATTTCCTATCCACGTGG 11235644 Query 160854 ACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATC 160913 | ||| |||| |||||| || | ||||||| | || || | ||| || |||||||| | Sbjct 11235645 ATGCAGTACACGTTCTGGGGGGTGTAGATGCCTCTCAGTAGCCTTTCAAACATCTCGACG 11235704 Query 160914 TTATGATGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAGGGAC 160973 || | |||||||| || || |||| ||||| || | ||||||| || || | Sbjct 11235705 TTCTCGTGGATCACAATCGAAAAGGCAATCGGGAAAACCTTCTCCTCTTCGCTGAGCGGA 11235764 Query 160974 CCGGTCAGGTACTTTCGCGTCTTGATAAAATAATCACAATCCCGCGTCATGTT 161026 ||||| || || ||||| | | ||| | ||||| | ||||||||| Sbjct 11235765 AAGGTCACATATTTGCGCGTTCTCTTGAAAGCCACGCAATCGCTCGTCATGTT 11235817 >seq199 Length=890228 Score = 114 bits (126), Expect = 1e-20 Identities = 269/398 (68%), Gaps = 6/398 (2%) Strand=Plus/Minus Query 160608 TTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTT 160667 || ||||| | ||||||||| ||||| || |||| || ||||| | ||||| | || Sbjct 489451 TTGAGCTGTTGGACGATCTCGAGGTTGGTTTTGATGGGGAAGTCCATGCCGCAGAGATTG 489392 Query 160668 ATCACGTACTTCCATTTCGCGC-TCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGC 160726 || | ||| ||||| || | || || | ||| ||| |||||| || | ||||| Sbjct 489391 ATGAAGTATTTCCAGCTCCGGTGTCTGGCCA-GCAATTCCTCCATGCAGTTCAGGTCTGC 489333 Query 160727 CTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTT 160786 |||||| | | |||||| ||||| || || ||||| |||| ||||| ||||| ||||| Sbjct 489332 CTGCACCCTGGCCCAGGAGGCGTAGACAACATTCTCCTGTTTCCTGGCGACAAATACGTT 489273 Query 160787 ATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACATCTTATCCGCCTTT-CGGT 160845 ||| || | | | | | | || ||| | ||| | | ||| || Sbjct 489272 GGGGAAGCAGGCGGCCACACTC-CTGACGGCAGCTTTGAAATCATGCGAGGATTTATTGT 489214 Query 160846 CCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACA 160905 | | ||| ||||| || | ||||| |||||||||||||| ||||||| ||| || || Sbjct 489213 CGATGTGGACGCAGTAGATATTCTGCGGCGCGTAGATGGCTCTGAGCAGCCTTTCAAAGT 489154 Query 160906 TCTC-TATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGA 160964 || ||||| |||||||| || || || || || || || || || ||| || | Sbjct 489153 GATCGGATCTT-TGATGGATGACCATGGAATAAGCAATTGGGAATTCCTCCTCTTCTCTG 489095 Query 160965 CTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAA 161002 ||||| || || | |||||||| ||| | ||||| Sbjct 489094 CTCAGTGAGAACGTGATGTACTTTCTGGTCCTTATAAA 489057 >seq132 Length=2005055 Score = 113 bits (124), Expect = 5e-20 Identities = 203/297 (68%), Gaps = 0/297 (0%) Strand=Plus/Plus Query 160655 ACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTCATGCA 160714 |||||| | || |||| ||| |||||| | | | | | | | || ||| ||||||| Sbjct 1954748 ACCGCAGAGATTGATCAAGTATTTCCATGTTGAGTTTCTTTGGAGAAGATCCTTCATGCA 1954807 Query 160715 ATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGC 160774 || | ||| ||||| || | ||| | || || || ||| |||| |||| ||||| Sbjct 1954808 GTTTACATCAGCCTGTACCCTGCTAAACGATGCATAAGTTACACTCTCAAGTTGGCTGGC 1954867 Query 160775 CACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACATCTTATC 160834 | ||||||||| || ||||| ||||| || ||| || || |||||| | || Sbjct 1954868 GATAAAGACGTTGTCAAAACATGACACAATGCCCTTAACTGCATCAAAGAAAGTTGTAGA 1954927 Query 160835 CGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAA 160894 | ||| ||| || || || || || | |||||||| || || || | || | | Sbjct 1954928 TGATTTTTTGTCAACATGAACACAGTAAAAATTCTGAGGTGCATATATTGATCTTAAAAG 1954987 Query 160895 CCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACTC 160951 || | ||||| || || | |||||||| || |||||||||||||| |||||||| Sbjct 1954988 TCTTCCAAACATGTCAATTCTGTGATGGATTACTATAGAGTAGGCTATAGGAAACTC 1955044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577066208051040