Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq51 96.9 4e-15 seq797 91.5 2e-13 seq121 84.2 3e-11 >seq51 Length=4861936 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 65077 GAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCT 65136 ||||| || | || ||||| ||| || || ||||| ||||| || |||||| ||| Sbjct 4860413 GAGCGAATTGTGGCTTTTGCTGCTGTAGAAGGAATCTTTTTCTCTGGATCATTCGCTGCT 4860354 Query 65137 ATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATT 65196 |||| |||||||||||||| ||||| ||||| ||| | |||||| |||||||| || Sbjct 4860353 ATTTTCTGGTTGAAGAAGCGAGGTCTGATGCCTGGCTTGACCTTCTCTAATGAACTGATC 4860294 Query 65197 TCCCGAGATGAGG 65209 | ||||||||| Sbjct 4860293 AGCAGAGATGAGG 4860281 >seq797 Length=31933 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 76487 GGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTG 76546 ||| |||| |||||||| ||||| | ||||||||||||||||| || || || ||| || Sbjct 11097 GGTGTTCGAAACAGTCTCTTGATTTCTCCAATGCCAACAGCCTCTACAGCTCAGATCCTG 11038 Query 76547 GGTAATAATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCA 76606 ||||| ||||| | | |||| || ||||| | || || ||| || ||| ||| || Sbjct 11037 GGTAACAATGAGTCCATTGAGCCGTACACCAGCAATATTTACACAAGGAGAGTGCTCTCA 10978 Query 76607 GGTGAGTT 76614 || ||||| Sbjct 10977 GGAGAGTT 10970 Score = 82.4 bits (90), Expect = 9e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 75878 TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGAT 75937 ||| | |||||| | | |||||||| |||||||| || || || ||| | ||||| || Sbjct 16830 TGGTATGCTATTATTGAGTCACAGACAGAGACTGGCACCCCGTACATGATGTACAAAGAC 16771 Query 75938 GCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGC 75997 || || |||| |||| ||||| ||||||||||||| || ||| | || || || Sbjct 16770 GCCTGCAACAGAAAGACCAACCACCAGAATTTGGGAACCATTAAGTCCAGTAACCTGTGT 16711 Query 75998 ACGGAAATTTTAGAGTACACAGATAAGGATGAG 76030 || || || | ||||| || ||||||||| Sbjct 16710 ACAGAGATAGTGGAGTATACCAGCAAGGATGAG 16678 >seq121 Length=2118225 Score = 84.2 bits (92), Expect = 3e-11 Identities = 74/90 (82%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 65428 ATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACC 65487 ||||||| | ||| ||||| |||||||| ||||| |||||| || || ||||| ||| Sbjct 640464 ATTTGGAGCA-GAA-AATCCTTTTGACTTCATGGAGAACATTTCTCTGGAAGGGAAAACC 640521 Query 65488 AACTTCTTTGAGAAGCGAGTTGGGGACTAT 65517 |||||||||||||||||||||| || ||| Sbjct 640522 AACTTCTTTGAGAAGCGAGTTGCTGAGTAT 640551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596411479227520