Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq94 93.3 6e-14 seq47 86.0 9e-12 >seq94 Length=3237593 Score = 93.3 bits (102), Expect = 6e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 155817 AATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAA 155876 || |||||||| || ||| | ||||| ||||||| || ||||||||| | || || ||| Sbjct 39700 AACAAAATGCAGATTTTTGTGAAAACCCTGACTGGCAAGACTATTACACTGGAGGTGGAA 39641 Query 155877 GATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCA 155936 ||| | ||| ||| || || ||| || || || ||||||||||| || || Sbjct 39640 CCCAGTGACACCATTGAAAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCACCC 39581 Query 155937 GAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGAT 155996 || ||||| | |||| | || || || ||||| ||||| | | || | ||||| Sbjct 39580 GACCAACAGCGTCTGATCTTCGCTGGCAAACAGCTGGAAGAAGGCCGCACACTGTCAGAC 39521 Query 155997 TATAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| |||||| | || |||||| | ||| | | | ||||| ||| Sbjct 39520 TACAATATCCAGAAAGAGTCCACTCTTCATCTGGTGCTGCGTCTGAGAGGGGGT 39467 >seq47 Length=5048387 Score = 86.0 bits (94), Expect = 9e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| || ||| | || || |||||||| || || ||||| | ||||| ||| Sbjct 1632900 AAAATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTTGAACCA 1632841 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||| | ||| ||||| ||| || || || || ||||||||||| ||||| || Sbjct 1632840 AGTGACACCATTGAGAACGTCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGAT 1632781 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 ||||| | | || | ||| || |||||| | |||||| | |||| |||| || || Sbjct 1632780 CAACAGCGTCTCATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGAACACTATCTGACTAC 1632721 Query 156000 AATAT 156004 || || Sbjct 1632720 AACAT 1632716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731678017326400